Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00219 ATGGCGCCAAAACGAAAACCTTCTTCTCCAATCTCCATAGGTAACTGCGAGGTTACTGTCGAGGCCACTCGTTACACCTGTAACTCCGATTCAAACGCCGTCGTAATCTCGCTTCCCCGAAGCGGAAAGATCAAAGTGTCAGTTGTTGAAAACCATGAGAACGCTTCTGAGAATTTTAGATCCAGTGATAAAGAGCATGAGTTCGTGCTGGTAAATCCTAAAGATGCTGATTCTGTTAGTAAATCCTACCTTCAGGAAGTATTACAAATGTACAAGACAGAGTTACCTGGAATGAATTATGCTGCAAATACCGGGAAACAATCCAAGTTTCTTGAGAGATGTGTGACTAATGGGAAATATCGAACCCTACTGGTAAAATCCACTTGTGTTGGTTATTCAGGAAAGGTTATAGCTGCAATTTCATACCAAATCATCCCTGCAGATACAGAATTTGCAGAAGTTCCACTTGCAGCCGTCAATGCTGTCCATCAACGAAAGGGTTTTGGTCATTTATTGGTTCTAGAGCTGCGGAAAAGACTTCAAAGTGTTGGCGTTCGTTCCATTTTATGCTGGGGAGACAAAGAATCAGAAGGATTTTGGCTTAAACAGGGTTTTGTAGAAATAGCACAGGTGGATACCAAAGGAAGGGCCCGCAGGTTACCTGTAAAAGCTGATATTCAAAAATCATTATGCTTTCTTGGTGGTTCAACTCTCATGGTTTGCCACGTAATGAAAGAATTCTTAGCCGATGATGCTAACACTACGAAGTGTCTCCCTTCACAGTTTCATCAGAAGTCCTGTACACCTGCCATTGCTGAAGGATTTGACAGTCATAATCCTAAGCTATGCTGTAGTAGTATTACTCCTTTTGGCCGAGCAAATGAGGATAGACAGGCCACTGGTGCAGAAAGTTCACAGGATGGAATTGATGCCAATGTGAATTATTGTTCTCAATCTACAAAAGGTGCAAAGAGGGCCTGGGAAGCCTCTTTATCCTCATTGAAGTCAAAAAGAGTGAAGGGGAGCCAGCTGGTTGACTATCAACCAGGTTCTAGCTGCGATTTTATCTTAGAGTCTTGTGAGGCCAATCCCTTTTTTGAAGAAGTCCCTCACGATCCTTCGATTACAAAAAGTTCTGAAAAATGTATCGAGAATTATTTACATTTAGAAGCTCCTAACAACATAGAACCGCCATCTACCAAACAATGTTTCAGAATTATGTTGATGAATATTGCTGATGATGCTAAGAAAACACAGCTTACAAAGGTTATTGAGGACCTTGGTGGAACTATATCCTATTGTGGAAGTAAGACCACACACGTTGTCACAGGAAAAGCGAGAAAGACTCTGAATTTCTGTACTGCCCTTTGTTCAGGTGCTTGGGTGATCTCATCAAGTTGGTTAAAAGAAAGTTTTCGTGAAGGCAGATTTGTTGATGAACTGCCTCACATACTGAACGATCCGGATTATCCGCTGAAGTACAAATCTGATTTAAAATGTGCAGTTTTACGGGCAAAAGCTAGCCCTCATACTTTGTTCAAGGGTTATAATATATGTATTGCAGCTCATGTTCAAACTCCTGCTAAAACATTGTCTGCAATTGTCATGTCCGCAGGTGGTAATGTTATTAGGAGAGTGGAGGAAGTAAAGGAAACATCAACAACAATCTTTGTGACGAGCGAAGAAGACACGGAAGAAGCAATGGTAGCTGCAAAGAAAGGGATCCGGACTTTCAGTTGCGATTGGTTTATGAATTGTGTGATGAGACAAGAACTTGACTTGGACGCCCCCCAGTTTGCTGAGTCCTTATAA 1812 0.4167 MAPKRKPSSPISIGNCEVTVEATRYTCNSDSNAVVISLPRSGKIKVSVVENHENASENFRSSDKEHEFVLVNPKDADSVSKSYLQEVLQMYKTELPGMNYAANTGKQSKFLERCVTNGKYRTLLVKSTCVGYSGKVIAAISYQIIPADTEFAEVPLAAVNAVHQRKGFGHLLVLELRKRLQSVGVRSILCWGDKESEGFWLKQGFVEIAQVDTKGRARRLPVKADIQKSLCFLGGSTLMVCHVMKEFLADDANTTKCLPSQFHQKSCTPAIAEGFDSHNPKLCCSSITPFGRANEDRQATGAESSQDGIDANVNYCSQSTKGAKRAWEASLSSLKSKRVKGSQLVDYQPGSSCDFILESCEANPFFEEVPHDPSITKSSEKCIENYLHLEAPNNIEPPSTKQCFRIMLMNIADDAKKTQLTKVIEDLGGTISYCGSKTTHVVTGKARKTLNFCTALCSGAWVISSSWLKESFREGRFVDELPHILNDPDYPLKYKSDLKCAVLRAKASPHTLFKGYNICIAAHVQTPAKTLSAIVMSAGGNVIRRVEEVKETSTTIFVTSEEDTEEAMVAAKKGIRTFSCDWFMNCVMRQELDLDAPQFAESL* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00219 603 ProSiteProfiles BRCT domain profile. 406 485 IPR001357 -
Lapu1g00219 603 Gene3D - 64 228 - -
Lapu1g00219 603 CDD NAT_SF 134 191 - -
Lapu1g00219 603 Pfam Acetyltransferase (GNAT) family 130 205 IPR000182 GO:0016747
Lapu1g00219 603 SUPERFAMILY BRCT domain 499 592 IPR036420 -
Lapu1g00219 603 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 70 212 IPR016181 -
Lapu1g00219 603 Gene3D BRCT domain 393 509 IPR036420 -
Lapu1g00219 603 SMART BRCT_7 510 590 IPR001357 -
Lapu1g00219 603 SMART BRCT_7 396 475 IPR001357 -
Lapu1g00219 603 CDD BRCT_PAXIP1_rpt6_like 512 593 - -
Lapu1g00219 603 Pfam BRCA1 C Terminus (BRCT) domain 509 587 IPR001357 -
Lapu1g00219 603 Pfam BRCA1 C Terminus (BRCT) domain 412 472 IPR001357 -
Lapu1g00219 603 Gene3D BRCT domain 510 602 IPR036420 -
Lapu1g00219 603 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 65 229 - -
Lapu1g00219 603 ProSiteProfiles BRCT domain profile. 508 592 IPR001357 -
Lapu1g00219 603 SUPERFAMILY BRCT domain 405 489 IPR036420 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Lapu1g00219 BRCT 0.00023 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00219 - - gmx:100806087 986.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00219 1 8935426 8941766 Lapu1g00219 1 8935426 8941766 ECH