Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00200 ATGGATCACAGACCGAAATCGAAGGATTCACTCCCTTACTCCACTCTTTTCAATCTCGAGTCTTTGGTGAACTTTCAACTTCCACAACAAGATGATGATTTTGATTATTATGGGAATAGTAGTCAGGATGAGAGCAGAGGCAGCCAAGGCGGGGGGATTGCAAATCACAGTAATGGGAATGTGCATGGAAGGGAGGCGAGTTTGTTGAAGAAGAGGAGGTGGTCTCTAAACAGTGACAATGAGGATAGGAGCGGTTTTTACGTGACACAGATGACAGAGGAGCGATATCGATCAATGCTGGGAGAGCATATTCAGAAATACAAGAGGAGGTTTAAGGATACGATGAGTAGTCCTGCTCAAAATCAAGCTGCTGCTCCACCTGTGAAAAGCAGCACAGGGTTAAAAGCTCGCAAGTCAGGGAATGAGCGCAGGGGAGGATTACATGCTGCCGAGACTGCATCAGAATGGATGAATGATTCGAGTTCCCAGAAACCAGGAAACTATCGTGATGCAGATTTCACGCCACAATATGGCACTGCTGATAGGATTATGTATGAACCTGCAACTTTGGATATTGGGGATGGAATCGTTTACAAGATTCCTCCAATCTATGATAAGTTGGCTGGAGCTCTAAGCCTCCCAAGCTTCTCGGATATCCATGTTGAGGATTTTTACTTAAAAGGCACTTTGGATTTGGGTTCATTGGCTGAAATGATGGCTGCTGATAAAAGATTTGGGAATAGAATTCGAGCCGGCATGGGGGAAGCATTACCCCAATATGAATCACTGCAGGCACGGCTGAAGGTCATGTCCGCTTCAAATTCTGCTCATAAATTCAGTCTGAAAGTGTCTGATGCTGGTTTGAATTCCTCCATTCCGGAGGGGGCAGCAGGAAGCATAAGGCGATCTATTTTGTCTGAGGGTGGTGTATTGCAGGTTTATTATGTGAAAGTTCTGGAGAAAGGTGACACCTATGAGATAATTGAAAGAAGCCTACCTAAGAAACAAAAGGTAAAAAAGGACCCTGCTTTGATAGAGAGGGAGGAAATGGAACGATGTGGTAAGATTTGGGTAAATATTGTGAGAAGAGACATACCAAAGCATCATAGGAACTTCACTACTTTTCATCGAAAGCAGCTCATTGATGCCAAGAGGGTCTCAGAGACTTGTCAAAGAGAGGTTAGAATGAAAGTTAGTAGATCCCTTAAATTGACAAGGGCTGCTGGTATGCGCACCCGGAAACTAGCTAGAGACATGTTGCTGTTCTGGAAACGAATAGATAAAGAGATGACAGAAGTCAGGAAGAGGGAGGAAAAAGAAGCTGCAGAAGCTTTGAGGCGTGAACAGGAGCTCCGAGAGGCAAAGAGGCAACAGCAAAGGCTTAATTTTCTTATACAACAAACTGAGCTGTACAGTCACTTTATGCAGAACAAGTCAAACTTACTATCGTCAGAAACTTTACCCAACGTAGATGAAGATGCAAATGACCAAGATGCAATGATTGATGACTCTTCAGATGCTAAGCCTGATGAGGAGGAAGATCCTGAAGAGGCTGAATTGAAGAAGGAAGCTTTGAAGGCTGCACAAGAAGCAGTTTTTAAGCAGAGAAGGTTGACAAGTGCTTTTGACACTGAATGCTTGAGGCTGCGCCAAGCTGGTGAAACAGATTCACTTCCACCAGACGTTGCTGGAGCAAGTAATATTGATTTGCAAACCCCCTCTACCATGCCAGTGGCATCCACGGTTCGGACACCTGAATTATTTAAAGGGGTTCTTAAAGAATATCAGCTGAAAGGTCTTCAGTGGCTTGTAAATTGTTATGAACAGGGTTTAAATGGTATTCTAGCAGATGAAATGGGACTTGGAAAGACCATTCAGGCCATGGCATTTTTGGCCCATTTAGCAGAGGAAAAAAACATATGGGGACCTTTTCTAGTTGTTGCACCTGCTTCAGTATTAAATAATTGGAATGAGGAACTTGAGCGCTTCTGCCCGGAACTGAAAAGACTTCCATATTGGGGTGGACTTTCAGAGCGTACAGTACTCAGGAAAAGTATTAACCCAAAGGATCTTTATCGTAGGGAAGCTAAATTTCACATTCTCATCACAAGCTACCAGCTATTAGTATCTGATGAGAAGTATTTTCGTCGCGTGAAATGGCAGTATATGGTTTTAGACGAAGCCCAGGCAATCAAAAGTTCAACAAGTATAAGATGGAAGACACTCCTCAGTTTTAATTGTCGGAATCGCCTACTTCTGACTGGTACACCCATTCAGAATAACATGGCTGAGTTATGGGCTCTTCTTCACTTCATCATGCCAACTTTATTTGACAGCCATGAGCAGTTTAATGAGTGGTTTTCTAAAGGAATTGAGAACCATGCAGAACATGGAGGCACTTTGAATGAGCACCAACTTAATCGATTGCATTCAATTCTAAAGCCTTTCATGCTGAGGCGCGTTAAAAAGGATGTGGTTTCTGAGCTGACTAGAAAAACTGAGATTACTGTGCATTGTAAGCTGAGTTCTCGGCAGCAGGCTTTTTATCAAGCAATTAAGAACAAGATATCTCTTGCTGAATTGTTTGACAGTAATCGTGGGCAGCTCAATGAGAAGAGAATTCTGAATTTAATGAACATTGTTATTCAACTAAGGAAGGTTTGCAACCATCCAGAGTTGTTTGAAAGGAGTGAGGGAAGCACATACCTTTACTTTGCAGAGATTCCAAATTCCCTTCCGCCTGCTCCATTTGGGGAATTGGAGGATGTTTATTATTCTGGTGGTCACAACCCCATATCATATGAGATGCCAAAACTTGTCTATGAAGAAATTATACAAAGTTCAGAGACTTTTGGATCAGCTGTTGGTCGTGGTGTCTCCAGAGAATCTTTTCAGAAACATTTTAATATTTTTAGACCAGAAAATGTTTTTAGATCTGTATTCTCAGAAGACATGTACAGTAAAAGTGGAAATCTAGGTTTTACCCATTTGATGGATTTGTCTCCACAAGAGGTGATGTTTCTGGCTACTGCTTCTTTTATGGAGCGACTATTATTTTCCATTACGAGATGGGAACGTAAATTCATTGATGAAGCTGTAGAATTTCTATCGGAGACCATAGATGTCGATCCAGAATGTAGTTACCTTGAGAAAGAAAAAGTGAGGGCAGTTACACGAATGCTATTGGTGCCAATGAGATCTGAGGCTCAGTCTCTGCGGGAAAGATTGCAAACTGGGCCCAGCCATGCTCCATTTGAGGCCTTGATTGTCCCACATGAAGATAGGCTGTTATCAAACGCTAGGCTTGTTCACTCCGCTTACACATATATCCCGCAAAGTAGAGCTCCCCCAATTGGTCTTCACTGCTCAAATAGAAACTTCTACTATAAAATGATTGAAGAATTACATGATCCCTCGGTTAAGAGGTTGTTTGTGGGATTTGCGCGTACATCTGATTATAATGGGCCTAGAAAACCAGATCCTCCTCATCATTTAATTCAAGAGATAGATTCTGAACTACCTGTTTCTCACCCTGCTCTTCAGTTAACACACAGCATATTTGGGACTTCTCCACCAATGCGCAATTTTGACCCTTCAAAATTGCTCACTGACTCTGGAAAGCTCCAAACACTTGATATATTATTAAAACGCCTAAGAGCAGGAAATCATCGTGTTCTCTTGTTTGCTCAGATGACCAAAATGCTGAATATTTTGGAGGACTACATGAACTATAGAAAATATAAGTATTTTAGACTTGATGGATCATCCACTATCCAGGATCGTAGAGACATGGTCAGAGACTTTCAGCATAGGAATGATATTTTTGTGTTCTTACTGAGTACAAGAGCTGGTGGGTTAGGTATCAACTTGACAGCTGCTGACACAGTTATATTTTATGAGAGTGATTGGAATCCCACATTGGATCTACAGGCAATGGACAGAGCTCATCGTTTGGGTCAGACAAAAGATGTTACTGTTTACCGACTTATATGTAAAGAGACAGTTGAAGAGAAGATTCTTCTCAGAGCCAGTCAGAAAAGCACTGTACAGAACCTTGTCATGACTGGCGGATCTGTTGGTGGTGATCTTTTAGCTCCCGAGGATGTTGTATCTTTGCTTCTAGATGATGCTCAGTTGGAGCAGAAATTAAAGGAGATTCCTCTCCAGGTAAAGGATAAGCAAAAGAAAAAACAACCTATGAGAGGCATTAGGGTAAATGAAGATGGTGATGCATCACTGGAAGATCTAACAAGCTCTGCAGCTCAAGGTACTTCAGATTATGATCCTGCCGTGGATCCAGAGGGTTCAAAGTCCAGTAATAAAAAGAGAAAAGCTGCGTCGGATAAGCCAACATCGAGGCAGAAGCATTCACAAAAGATGAGTGAATTTAGTACTGCACCCATGGACAGCGAATTGGATGATGTCGATCCAGTGGTTCAGAAACCCAAGAGACCGAAGAGGGTAAAGAAGAATGTGAACGTTGAAGATGCGTTAACTATTGTCCCAGAGCAGAGCCAATTTCAACCTCCACGTGATTTTAGTGCCGGAGGTTCTAAAGCAGAATCAGGCCAAGACAACTGA 4581 0.4224 MDHRPKSKDSLPYSTLFNLESLVNFQLPQQDDDFDYYGNSSQDESRGSQGGGIANHSNGNVHGREASLLKKRRWSLNSDNEDRSGFYVTQMTEERYRSMLGEHIQKYKRRFKDTMSSPAQNQAAAPPVKSSTGLKARKSGNERRGGLHAAETASEWMNDSSSQKPGNYRDADFTPQYGTADRIMYEPATLDIGDGIVYKIPPIYDKLAGALSLPSFSDIHVEDFYLKGTLDLGSLAEMMAADKRFGNRIRAGMGEALPQYESLQARLKVMSASNSAHKFSLKVSDAGLNSSIPEGAAGSIRRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKVKKDPALIEREEMERCGKIWVNIVRRDIPKHHRNFTTFHRKQLIDAKRVSETCQREVRMKVSRSLKLTRAAGMRTRKLARDMLLFWKRIDKEMTEVRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSNLLSSETLPNVDEDANDQDAMIDDSSDAKPDEEEDPEEAELKKEALKAAQEAVFKQRRLTSAFDTECLRLRQAGETDSLPPDVAGASNIDLQTPSTMPVASTVRTPELFKGVLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPELKRLPYWGGLSERTVLRKSINPKDLYRREAKFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSSTSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVVSELTRKTEITVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKRILNLMNIVIQLRKVCNHPELFERSEGSTYLYFAEIPNSLPPAPFGELEDVYYSGGHNPISYEMPKLVYEEIIQSSETFGSAVGRGVSRESFQKHFNIFRPENVFRSVFSEDMYSKSGNLGFTHLMDLSPQEVMFLATASFMERLLFSITRWERKFIDEAVEFLSETIDVDPECSYLEKEKVRAVTRMLLVPMRSEAQSLRERLQTGPSHAPFEALIVPHEDRLLSNARLVHSAYTYIPQSRAPPIGLHCSNRNFYYKMIEELHDPSVKRLFVGFARTSDYNGPRKPDPPHHLIQEIDSELPVSHPALQLTHSIFGTSPPMRNFDPSKLLTDSGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYKYFRLDGSSTIQDRRDMVRDFQHRNDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDAQLEQKLKEIPLQVKDKQKKKQPMRGIRVNEDGDASLEDLTSSAAQGTSDYDPAVDPEGSKSSNKKRKAASDKPTSRQKHSQKMSEFSTAPMDSELDDVDPVVQKPKRPKRVKKNVNVEDALTIVPEQSQFQPPRDFSAGGSKAESGQDN* 1527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00200 1526 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 822 1388 IPR027417 -
Lapu1g00200 1526 SMART helicmild6 1236 1319 IPR001650 -
Lapu1g00200 1526 MobiDBLite consensus disorder prediction 33 61 - -
Lapu1g00200 1526 ProSiteProfiles DBINO domain profile. 356 481 IPR020838 GO:0003677
Lapu1g00200 1526 MobiDBLite consensus disorder prediction 1390 1411 - -
Lapu1g00200 1526 Pfam Helicase conserved C-terminal domain 1210 1319 IPR001650 -
Lapu1g00200 1526 Pfam SNF2-related domain 607 894 IPR000330 GO:0005524|GO:0140658
Lapu1g00200 1526 MobiDBLite consensus disorder prediction 154 169 - -
Lapu1g00200 1526 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1210 1394 IPR001650 -
Lapu1g00200 1526 SMART ultradead3 588 783 IPR014001 -
Lapu1g00200 1526 MobiDBLite consensus disorder prediction 486 521 - -
Lapu1g00200 1526 MobiDBLite consensus disorder prediction 114 128 - -
Lapu1g00200 1526 FunFam DNA helicase INO80-like protein 1178 1430 - -
Lapu1g00200 1526 CDD SF2_C_SNF 1198 1330 - -
Lapu1g00200 1526 Pfam DNA-binding domain 351 480 IPR020838 GO:0003677
Lapu1g00200 1526 MobiDBLite consensus disorder prediction 1390 1526 - -
Lapu1g00200 1526 FunFam Putative DNA helicase INO80 564 842 - -
Lapu1g00200 1526 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 604 775 IPR014001 -
Lapu1g00200 1526 PANTHER HELICASE SRCAP-RELATED 90 529 - -
Lapu1g00200 1526 MobiDBLite consensus disorder prediction 1498 1512 - -
Lapu1g00200 1526 MobiDBLite consensus disorder prediction 491 518 - -
Lapu1g00200 1526 Gene3D - 1174 1425 IPR027417 -
Lapu1g00200 1526 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 576 820 IPR027417 -
Lapu1g00200 1526 Coils Coil 428 467 - -
Lapu1g00200 1526 Gene3D - 566 844 IPR038718 -
Lapu1g00200 1526 MobiDBLite consensus disorder prediction 1435 1456 - -
Lapu1g00200 1526 MobiDBLite consensus disorder prediction 112 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00200 Lapu-Chr1 8350183 8360951 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00200 613 946 RAD5 or RAD16-like Gene Family AT5G43530 27.822 4.91e-26 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lapu1g00200 SNF2_N 5.9e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00200 K11665 - gmx:100780615 2678.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00200 1 8350183 8360951 Lapu1g00200 1 8350183 8360951 ECH