Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00185 ATGGAACTGAAGGTGCTTACACAGATGCAAGTGACCCTGTTGCTGCTGATTGCCTTAAGAATAACAGAAACTGCAGCAGATGACCTAGCCCTGCCCGGTTGCCTGAACAAGTGCGGAGATGTTTCAATTCCATACCCCTTTGGCGTTGGCGTGTCAACTGTCACGGGAGAAAACTGTTTCATGGAGGAAGACTTGAAACTCAGCTGCACAGACTCCGCTCTATACACAGGTAACGTCGAAATTCTGAACATAACCCTCCAAGGTCAAATGGAGATGAATTTCTTCGTCTCCAGTATCTGCAAAATCAACATTTCTAACGGAGAAACAGAAGCCAACGAACCCACACTCAAAACTTCATCCTTCACCATTTCCAGCAAGGACAACAAGTTCGTGAGTATAGGGTGCGACACGTACGGGTATCTCAACAGTTTCGTCAATAATGGGAAATACTCAACAGGGTGCCTGACAAGATGTGACAAGAATGAAGAGAGCTTGAAAAACATGCAGAGAAGTGATGGGGACTGTGCGGGCGTAGGGTGCTGCCAGGTGGATATTCCTCCTGGAATGAAGAACATCAGTATACAAGCATACTCCTTTAATCATTTCGTAAACTCTTCCAATCCCAACAGCTGCAGCGTTTCGTTCGTGGTGAAAAATGACAAGTACAAATTCTCGCTGGATGATTTGAAGCACATTCCATTCCATAAGGCTCCCATGGTGGTTGATTGGACTGTTGGAGATGGAGCATGTAACGTTTCCAACGCCTGCGCCAGTCCTTACAGCTATTGCGAGGATCCGCCCTCTGCCAATGGAACTGGTTACCTATGCAAATGTAAACCAGGTTTCGAGGGCAACGCTTACCTTCCCCAAGGTTGCACAGATGTTTTGGAATGCAAAAGTGGCACACACAATTGCGCAAGAGCAGAGTATTGTCACGAAATTCTTGGCTCTTTTAACTGTTCATGTCCTGATAAATTAGTCGGAAATGCAACATTCGGAGGTGAAGGTTGCCACCCAAAGCAGCGAGCTGATGCATTTCCCAAGATCGTAATTGGTGCAGGTGTAGGGTTAATTGCTCTATTTGTGGGGATTTTTTGGCTATACTTGATGTACCAGAAAAGGAGAGTCCTGAAACTAAGGGAGAAGTTCTTTCAACATAATGGGGGCTTCATTCTAAGACAACAACTCTCCACAATTGGAGACTCGTCTCAATGTGCTACAATTTTCAATGTTGAGCAACTTAAGAAAGCCACCAACAATTTTGATGAGAGTTTAATCATCGATAAAGGCGGTTATGGAACAGTTTTCAAAGGAGTTCTCTCAAATAACCAAGTTGTGGCTATCAAAAAATCCAAAATAGTGGATACGAGCCAGGTGGAGCTATTCATTAACGAGGTCATTATACTGTCACTAATTAATCACAGGAATGTGATCAAACTCTTGGGTTGTTGTCTAGAGACAGAAGTTCCTTTGTTGGTCTACGAATTTGTTAAAAATGGCACCCTTTTTGAGTATTTGCATAAACAAAGGCAGGATGTATGTTGGGAAATGCGTCTAAGAATTGCCACAGAGGTAGCTGCAGCTTTGGAATATCTACATTTGGCAGCTAACCCACCCATCATCCACAGAGATGTGAAAACGACTAACATACTCTTAGATGACAATAACACTGCCAAAGTGTCTGACTTTGGAGTGTCACGATTGGTTGCACTTGACCAAACTGAAATAGCCACAAGTGTTCAAGGAACCTTTGGCTATATAGACCCAGAGTACATGCAATCAGGCCAACTGACTGAAAAAAGTAATGTCTATAGCTTTGGGGTAGTGCTTGTAGAGCTGCTAACTGGAGAGGAACCTTTCTCTTTCCATAGATCAGAAGAGAAACGAAGTCTTACAGATAACTTTCTATGTAGCTTGAAAGAGGATCGTCTATTTGATGTTCTTCAGGATGGTATAGTGAATGAAGAAAATAAGCAAGAGATTATGAAGGTTGTTATTCTTGCTGCCAGATGCTTGAGAGTTACAAGTGAGGAAAGGCCTAGCATGAAGGAAGTGGCCATGGAATTGGAGGGAATAAGGCTTATGGACAAACACCCTTAG 2100 0.4329 MELKVLTQMQVTLLLLIALRITETAADDLALPGCLNKCGDVSIPYPFGVGVSTVTGENCFMEEDLKLSCTDSALYTGNVEILNITLQGQMEMNFFVSSICKINISNGETEANEPTLKTSSFTISSKDNKFVSIGCDTYGYLNSFVNNGKYSTGCLTRCDKNEESLKNMQRSDGDCAGVGCCQVDIPPGMKNISIQAYSFNHFVNSSNPNSCSVSFVVKNDKYKFSLDDLKHIPFHKAPMVVDWTVGDGACNVSNACASPYSYCEDPPSANGTGYLCKCKPGFEGNAYLPQGCTDVLECKSGTHNCARAEYCHEILGSFNCSCPDKLVGNATFGGEGCHPKQRADAFPKIVIGAGVGLIALFVGIFWLYLMYQKRRVLKLREKFFQHNGGFILRQQLSTIGDSSQCATIFNVEQLKKATNNFDESLIIDKGGYGTVFKGVLSNNQVVAIKKSKIVDTSQVELFINEVIILSLINHRNVIKLLGCCLETEVPLLVYEFVKNGTLFEYLHKQRQDVCWEMRLRIATEVAAALEYLHLAANPPIIHRDVKTTNILLDDNNTAKVSDFGVSRLVALDQTEIATSVQGTFGYIDPEYMQSGQLTEKSNVYSFGVVLVELLTGEEPFSFHRSEEKRSLTDNFLCSLKEDRLFDVLQDGIVNEENKQEIMKVVILAARCLRVTSEERPSMKEVAMELEGIRLMDKHP* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00185 699 ProSitePatterns Serine/Threonine protein kinases active-site signature. 540 552 IPR008271 GO:0004672|GO:0006468
Lapu1g00185 699 Gene3D Transferase(Phosphotransferase) domain 1 497 698 - -
Lapu1g00185 699 ProSiteProfiles Protein kinase domain profile. 421 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g00185 699 Pfam Wall-associated receptor kinase galacturonan-binding 34 89 IPR025287 GO:0030247
Lapu1g00185 699 FunFam Fibrillin 2 289 333 - -
Lapu1g00185 699 Pfam Protein tyrosine and serine/threonine kinase 427 689 IPR001245 GO:0004672|GO:0006468
Lapu1g00185 699 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 27 693 IPR045274 GO:0007166
Lapu1g00185 699 Pfam Calcium-binding EGF domain 294 325 IPR001881 GO:0005509
Lapu1g00185 699 SMART serkin_6 421 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g00185 699 CDD STKc_IRAK 427 692 - -
Lapu1g00185 699 FunFam Wall-associated receptor kinase 2 497 699 - -
Lapu1g00185 699 SUPERFAMILY Protein kinase-like (PK-like) 402 690 IPR011009 -
Lapu1g00185 699 Gene3D Laminin 248 333 - -
Lapu1g00185 699 FunFam Wall-associated receptor kinase 2 391 496 - -
Lapu1g00185 699 Gene3D Phosphorylase Kinase; domain 1 390 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00185 Lapu-Chr1 7824220 7827575 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00185 1 694 Receptor kinase-like Gene Family AT1G21230 42.172 0.0 534
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Lapu1g00185 PK_Tyr_Ser-Thr 3.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00185 - - gmx:100819535 926.391