Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00184 ATGGGATTGAAGGTGCTTACACAGATGCAAGTGACCCTGCTGCTGCTGCTGATTGCGTTAACAATAACAGGAACTGCAACAGATGACCTAGCCCTGCCCGGCTGCCCGGACAAGTGCGGAAGTGTTTCAATTCCGTACCCCTTTGGCGTTGGCGTGTCAACTGTCACTAGAAAGAACTGTTTCATGGAGGAAGACTTGGAACTCAACTGCACAGACTCCACTCTATACGCAGGTAACGTCGAAATTCTGAACATAGACCTCCAAGGTCAAATGGAGATGAATTTCTTCGTCTCCAGTATCTGCAAAATCAACATTTCTAAAGGAGAAACAGTAGCCAACGAAGCCACACTCAAAACTGCATCCTTCACCATTTCCAGCAAGAAGAACAAGTTCGTGAGTATAGGGTGCGACACGTACGGGTATCTCAACAGTTTCGTCTACAATGGGAAATACTCAACAGGGTGTCTGACAAGATGTGACAAGAATGAAGAGAGCTTGAAAAACATGCAGAGAAGTGATGGGGACTGTGCGGGCATAGGGTGCTGCCAGGTGGATATTCCTCCTGGAATGAAGAACATCAGTCTACAAGCAGCCTCCTTTAATAATTTCGAGAAGTCTTCCAATCCCAACAGCTGCAGCGTTTCGTTCGTGGTGAAAAATGACGGGTACAAATTCTCGCTGGATCATTTGAAGCACATCCCATTCCATAAGGCTCCCATGGTGGTTGATTGGACTGTTGGAGATGGTACATGTAGAACCATCTCAGACCCCTGCCCCAGCCATAACAGCTATTGCGAGGACCCGCCCTCTGCGAATGGAACTGGCTACCTATGCAAATGTAAACCAGGTTTTGAGGGCAACGCTTATCTTCCCGACGGTTGTACAGACGTTTTGGAATGTAAAACTGACAATCACACTTGTGCAAAGCGAGAGTACTGTCATGAAATGCCTGGTTCTTTTAACTGTTCATGTCCTGATAAACAAATCGGAAATGCAACACGTGGAGGTGAAGGTTGCCACCCAAAGGAGCGAGCTGATATATTTACCAAGATTGTCATTGGTACAGGAGTAGGGTTAATTGCTCTATTTGTGGGGGTTTCTTGGCTATACTTGATGCACCAGAAAAGGAGAGTCTTGAAACTAAAGGAGAGGTTCTTTCAGCAGAATGGGGGCTTTATACTAAGACAACAACTCTCTACAAGAGGAGACTTATCCGCTAGAATTTTTAATGTTGAGCAACTTAAGAAAGCCACCAACAATTTTGATGAGAGTTTAATCATCGGTAAAGGAGGTTATGGAACAGTTTTCAAAGGGGTTCTCTCAAATAACCAAGTTGTGGCTATCAAAAAGTCCAAAATAGTGGATAAGAGCCAGGTGGAGCAATTCATTAATGAGGTCACTATACTATCACAGATTAATCACAGGAATGTGGTCAAACTCTTGGGTTGTTGTCTAGAGACAGAAGTTCCTTTATTGGTCTATGAATTTATTAAAAATGGTACCCTTTTTGAGTATTTGCATAGACAAGGGCAGGATGTATGTTGGAAAACGCGTCTAAGGATTGCCACAGAGGCAGCTGCAGCTTTGCAATATCTACACTCGGCAGCAAACCCACCCATCATCCACAGAGATGTGAAAACTGCCAACATACTCTTAGATGACAATAACACTGCGAAAGTGTCTGACTTTGGAGCTTCACGATTGGTTGCACTTGACCAAACTGAAATAGCCACAATTGTGCAAGGAACCTTTGGCTATTTAGACCCAGAGTACATGCAATCAGGCCAATTGACTGAAAAAAGTGATGTCTATAGCTTTGGGGTAGTGCTTGTAGAGCTGCTAACAGGAGAGGAACCTTTCTCTTTTCATAAGGCAGAAGAGAAACGAAGTCTTACTGTTCACTTTCTATGTAGCTTGAAAGAGGATCATCTTTTTTATATTCTTCAGGATGGTATTGCAGATGAAGAAAATAAGCAGGAGATTATGGAAGTTGCTATTCTTGCTGCCAGGTGCTTGAGACTTACAGGAGAGGAAAGGCCTAGCATGAAGGAAGTGGCCATGGAATTGGAGGGAATAAGGCTTATGGACAAACACCTTGGGATGAATACAAGCCAAGATTTTGAGGAGAACCAATACTTACTTTCTGAGGTACAAAGAACTCGTGAACATGGTGATAGTAGTGGCCAACAAAATATTGGATATGATAGCTTGAGAGAACTTGAATTACATAACTTTGGTAATGGAAGATGA 2250 0.4338 MGLKVLTQMQVTLLLLLIALTITGTATDDLALPGCPDKCGSVSIPYPFGVGVSTVTRKNCFMEEDLELNCTDSTLYAGNVEILNIDLQGQMEMNFFVSSICKINISKGETVANEATLKTASFTISSKKNKFVSIGCDTYGYLNSFVYNGKYSTGCLTRCDKNEESLKNMQRSDGDCAGIGCCQVDIPPGMKNISLQAASFNNFEKSSNPNSCSVSFVVKNDGYKFSLDHLKHIPFHKAPMVVDWTVGDGTCRTISDPCPSHNSYCEDPPSANGTGYLCKCKPGFEGNAYLPDGCTDVLECKTDNHTCAKREYCHEMPGSFNCSCPDKQIGNATRGGEGCHPKERADIFTKIVIGTGVGLIALFVGVSWLYLMHQKRRVLKLKERFFQQNGGFILRQQLSTRGDLSARIFNVEQLKKATNNFDESLIIGKGGYGTVFKGVLSNNQVVAIKKSKIVDKSQVEQFINEVTILSQINHRNVVKLLGCCLETEVPLLVYEFIKNGTLFEYLHRQGQDVCWKTRLRIATEAAAALQYLHSAANPPIIHRDVKTANILLDDNNTAKVSDFGASRLVALDQTEIATIVQGTFGYLDPEYMQSGQLTEKSDVYSFGVVLVELLTGEEPFSFHKAEEKRSLTVHFLCSLKEDHLFYILQDGIADEENKQEIMEVAILAARCLRLTGEERPSMKEVAMELEGIRLMDKHLGMNTSQDFEENQYLLSEVQRTREHGDSSGQQNIGYDSLRELELHNFGNGR* 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00184 749 ProSitePatterns Serine/Threonine protein kinases active-site signature. 540 552 IPR008271 GO:0004672|GO:0006468
Lapu1g00184 749 Gene3D Laminin 249 336 - -
Lapu1g00184 749 FunFam Wall-associated receptor kinase 2 497 712 - -
Lapu1g00184 749 FunFam Wall-associated receptor kinase 2 393 496 - -
Lapu1g00184 749 SMART egf_5 299 340 IPR000742 -
Lapu1g00184 749 SMART egf_5 250 295 IPR000742 -
Lapu1g00184 749 Gene3D Phosphorylase Kinase; domain 1 393 496 - -
Lapu1g00184 749 Pfam Protein kinase domain 425 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g00184 749 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 30 702 IPR045274 GO:0007166
Lapu1g00184 749 SMART serkin_6 421 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g00184 749 Pfam Wall-associated receptor kinase galacturonan-binding 35 90 IPR025287 GO:0030247
Lapu1g00184 749 CDD STKc_IRAK 427 692 - -
Lapu1g00184 749 ProSitePatterns Protein kinases ATP-binding region signature. 427 450 IPR017441 GO:0005524
Lapu1g00184 749 ProSiteProfiles Protein kinase domain profile. 421 701 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g00184 749 SUPERFAMILY Protein kinase-like (PK-like) 403 690 IPR011009 -
Lapu1g00184 749 Gene3D Transferase(Phosphotransferase) domain 1 497 715 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00184 Lapu-Chr1 7792947 7796186 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00184 35 749 Receptor kinase-like Gene Family AT1G21230 43.562 0.0 559
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Lapu1g00184 Pkinase 1.4e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00184 - - gmx:100819535 988.793