Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00179 ATGGCTTCGTCTTCTTCCGATCCTGGAAAGTCTGCAGAGACGTCGGAAGCGGCGGTGGCAACCGATCAGCTCTTGCTTTACCGAGGATTGAAGAAAGCGAAGAAGGAAAGAGGTTGCACCGCCAAAGAGCGCATCAGCAAAATGCCTCCATGCGCTGCTGGAAAACGCAGCTCCATATACCGCGGCGTCACCAGGCATAGGTGGACTGGTCGTTATGAAGCGCACCTTTGGGATAAGAGTACGTGGAATCAGAATCAGAATAAGAAGGGAAAACAAGTTTACTTGGGGGCATATGATGACGAGGAAGCAGCTGCTAGAGCTTATGATCTTGCTGCTCTCAAATACTGGGGTCCAGGGACTCTAATTAACTTTCCAGTGACTGATTATACAAGAGATCTTGAAGAAATGCAGAATGTATCGAGAGAAGAGTACCTTGCATCTTTACGGCGGAAGAGCAGTGGTTTTTCTAGAGGACTATCAAAATATCGTGGACTGTCCAGTCGATGGGAGTCGTCATATGGCCGCATGTCGGGATCTGATTACTTCAATAGCATGCATTATGGTGCAGGGGATGATTCAGCCGCAGAAAGTGAATATGTGAGTGGTTTCTGCATAGAAAGAAAGATTGATTTAACAAGTCACATCAAATGGTGGGGATCTAATAAGACTCGACATTCTGACTCTGGGACAAGATTATCAGAAGAAAAAAAACTTGGTTCTGCTGGAGATATTTGCAGTGAACTAAAGCAATTGGAACAGAAAGTTCAACCTACAGAACCTTATCAGATGCCACAGTTAGGCAGGCCACACAATGAGAAAAAGAAAAGAAGTTCTTCAGTCTCTGCCTTAAGTATCCTTTCGAAATCTGCTGCTTACAAGAGCTTGCAAGAGAAAGCGGCAAAGAGACAGGAAAATAGTATTGATAACGATGAGAATGAAAACAAAAATACAATCAACAAATTGGATCATGGAAAGGCAGTTGAGAAACCATCAAACCATGATGGAGGCAATGAACGGCTTGACATTTCAATGGGAATGAGTGGGACAATGCCTCTTCAAAGAAATGTCTACCCTTTGACACCATTCTTGTCTGCACCACTTTTGACAGCTTATAATACCGTTGATCCAATGGTAGATCCTGTTCTCTGGACGTCTCTTGTTCCCGTACTTCCTGCTGGCCTTTCTCGTACAGCCGAGGTTACAAAGACAGAGACCAGTTCAACGTACACAATGTTTCAGCCAGAGGAATGA 1251 0.4444 MASSSSDPGKSAETSEAAVATDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGLSKYRGLSSRWESSYGRMSGSDYFNSMHYGAGDDSAAESEYVSGFCIERKIDLTSHIKWWGSNKTRHSDSGTRLSEEKKLGSAGDICSELKQLEQKVQPTEPYQMPQLGRPHNEKKKRSSSVSALSILSKSAAYKSLQEKAAKRQENSIDNDENENKNTINKLDHGKAVEKPSNHDGGNERLDISMGMSGTMPLQRNVYPLTPFLSAPLLTAYNTVDPMVDPVLWTSLVPVLPAGLSRTAEVTKTETSSTYTMFQPEE* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00179 416 ProSiteProfiles AP2/ERF domain profile. 59 125 IPR001471 GO:0003700|GO:0006355
Lapu1g00179 416 FunFam AP2-like ethylene-responsive transcription factor 58 127 - -
Lapu1g00179 416 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700|GO:0006355
Lapu1g00179 416 PRINTS Ethylene responsive element binding protein signature 107 127 IPR001471 GO:0003700|GO:0006355
Lapu1g00179 416 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 23 301 - -
Lapu1g00179 416 MobiDBLite consensus disorder prediction 254 280 - -
Lapu1g00179 416 Coils Coil 293 320 - -
Lapu1g00179 416 MobiDBLite consensus disorder prediction 296 341 - -
Lapu1g00179 416 MobiDBLite consensus disorder prediction 296 336 - -
Lapu1g00179 416 SMART rav1_2 59 131 IPR001471 GO:0003700|GO:0006355
Lapu1g00179 416 Pfam AP2 domain 59 117 IPR001471 GO:0003700|GO:0006355
Lapu1g00179 416 SUPERFAMILY DNA-binding domain 58 126 IPR016177 GO:0003677
Lapu1g00179 416 Gene3D AP2/ERF domain 59 127 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00179 Lapu-Chr1 7656488 7660464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00179 18 414 AP2-EREBP Transcription Factor Family AT2G41710 63.814 6.03e-169 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lapu1g00179 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00179 K09285 - gmx:100786651 761.14