Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00162 ATGGCCGAATCATTTCTCTTCAGCATGGCAGAGTCACTCGTGGCAAAGCTTGCTTCTCGTGCTTTTGAAGAAGCTTCTCGAGTGGTGGGCTTATACGACAATCTTCGAGACCTTACAAAGACTCTCTCTTTAGTCAAGGCTGTGCTGTTAGATGCTCAGCAAAAGCAGGAGCACAGCCATGAGCTCCGGGAATGGCTGACTCAGCTCAAAACTGTCTTCTCCGACGCCGAAGATGTTTTGGATGAATTTGAGTGCCAAACACTACGAAAGAAAGTGGTCAAAGCTCATGGTAGCACCAGAGACAAGGTAAGTCACTTCTTCTCAGGATCTAATCCACTTGTTTTTCGTTACAAAATGGCTCAACAAATTGAAGATATCAGCAACAGACTAGACAAGGTTGCAGCTGATAGGCATAAGTTTAGTCTTCAAATAATTGATGTTGACACACGTGTTGTGCATCGCAGAGATATGACACATTCCCGTGTGAGTGATTCAGATGTGATAGGAAGGGAACACGAGAAAGAAAAGATCATAGAGCTTTTGATGCAGCAGAATCCTAATGATGATGATGCAAGTCTCTCTGTTATCCCCATTGTTGGGATTGGAGGCTTGGGAAAGACTACGCTTGCAAAGTTTGTATTCAATGACAACAGGATCCAGGAGTGTTTTCCATTGAAGATGTGGGTGTGTGTTTCAAATGATTTTGACATTAAACAACTGATTATCAAAATCATCAATTCTGGCAATGATCCAGCTTCTGCTGATGCTCCTTCCCACCAACAGAATTGGAACATGTTGGAACTGGAGCAACTGCAAAACCAACTGAAAAACAAACTTTCCGGTCAAAAATTCTTACTTGTCTTGGACGATGTATGGAACGAAGACCGTGTTAAATGGGTTGAGCTGCGGAATTTAATCCAAGTAAGTGCAGCAGGAAGTAAAATTGTAGTGACCACACGTAGCCATGCAATTGCTTCCATGATGGGCACAGTTCCCTCCCACATTTTAGAAGGTCTTTCTCAGGTGGATTCGTTGTCTCTCTTTGTCAAATGGGCATTTAAAGAGGGAGAAGAGAGAAATCATCCTCACTCAGTAAATATTGGTAGAGAAATTGTGAAAAAATGTAGAGAGGTTCCTTTGGCAGTGAGAACATTAGGGAGTTTACTATTCTCGAAATTTGAGGCCAGGGAATGGGAATATGTGAGAGACAATGAAATTTGGAATTTGCCTCAGAAAAGGGACGACATTTTACCAGCTCTTAAATTAAGTTATGATCTCATGCCGTCCTATTTGAGGAAATGTTTTGCGTTGTTTTCGCTTTATCCAAAGGATTATGTATTCAATAATTTTAGGATAACTTCGCTTTGGAGGGCACTTGGACTTATTGCATTACCAGAAAAGAATATGACGGTTGAAGATGTGGGCAATGAATATTTGCATGAACTCCTGACAATATCTTTTCTTCAAGATTTTGAAAGCTTTGGCACCTTTTATAGTTTTAGAATACATGATTTGGTTCATGATCTCGCTCTATTTGTTGCAAAGGATGAGTGTCTATATGTAAGTTCCAACATTCAAAATATTCCAGACAGTGTCCGGCATCTTTCTTTTGCTGAAAGCAGTTTGTTTGATAATTTAGTCACCAAAAAGTCAGCAGCTGTGAGAACCGTACTGTTTCCAAATGGTGCAGCAGCGACCAACGGTGAAGCTTTACTAAATACGTGTATGTCAAAGTTCAAAAGCTTGCGGGTTTTGGGTTTACATAGTTCGACATTCGAGACTTTGCCCCGTGCCATTGCTAAGTTGAAACATTTGAGATATTTGGACATTAGCAACAATCTCAACATTAAGAGACTCCCTGAATCTATTTGCAAGCTCCATAGTTTACAAGTGTTGGACCTTTATGGATGCTTGGAGCTGGAAGCATTGCCCAAAAGATTAAGAAAATTGATCAATCTCCGTGAATTAGAGTTTACCATAAAGCAAACTGTTTTGCCTGTCAATGAGATTGCCAACTTGGATTCGCTTGAAAAATTGAATGTTGAATCATGTCATAATGTGGAGTCCATATTTGAAGGGGTGAAATTCCCTGCTCTTAAAGTATTGAACATTAGTGTGTGT 2121 0.4036 MAESFLFSMAESLVAKLASRAFEEASRVVGLYDNLRDLTKTLSLVKAVLLDAQQKQEHSHELREWLTQLKTVFSDAEDVLDEFECQTLRKKVVKAHGSTRDKVSHFFSGSNPLVFRYKMAQQIEDISNRLDKVAADRHKFSLQIIDVDTRVVHRRDMTHSRVSDSDVIGREHEKEKIIELLMQQNPNDDDASLSVIPIVGIGGLGKTTLAKFVFNDNRIQECFPLKMWVCVSNDFDIKQLIIKIINSGNDPASADAPSHQQNWNMLELEQLQNQLKNKLSGQKFLLVLDDVWNEDRVKWVELRNLIQVSAAGSKIVVTTRSHAIASMMGTVPSHILEGLSQVDSLSLFVKWAFKEGEERNHPHSVNIGREIVKKCREVPLAVRTLGSLLFSKFEAREWEYVRDNEIWNLPQKRDDILPALKLSYDLMPSYLRKCFALFSLYPKDYVFNNFRITSLWRALGLIALPEKNMTVEDVGNEYLHELLTISFLQDFESFGTFYSFRIHDLVHDLALFVAKDECLYVSSNIQNIPDSVRHLSFAESSLFDNLVTKKSAAVRTVLFPNGAAATNGEALLNTCMSKFKSLRVLGLHSSTFETLPRAIAKLKHLRYLDISNNLNIKRLPESICKLHSLQVLDLYGCLELEALPKRLRKLINLRELEFTIKQTVLPVNEIANLDSLEKLNVESCHNVESIFEGVKFPALKVLNISVC 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00162 707 Pfam Rx N-terminal domain 11 98 IPR041118 -
Lapu1g00162 707 PRINTS Disease resistance protein signature 375 389 - -
Lapu1g00162 707 PRINTS Disease resistance protein signature 624 640 - -
Lapu1g00162 707 PRINTS Disease resistance protein signature 195 210 - -
Lapu1g00162 707 PRINTS Disease resistance protein signature 278 292 - -
Lapu1g00162 707 FunFam Probable disease resistance protein At1g61300 149 332 - -
Lapu1g00162 707 Pfam NB-ARC domain 171 425 IPR002182 GO:0043531
Lapu1g00162 707 Coils Coil 704 707 - -
Lapu1g00162 707 Gene3D - 423 511 IPR036388 -
Lapu1g00162 707 Gene3D - 10 124 - -
Lapu1g00162 707 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 437 IPR027417 -
Lapu1g00162 707 Gene3D Ribonuclease Inhibitor 553 707 IPR032675 -
Lapu1g00162 707 PANTHER DISEASE RESISTANCE PROTEIN RP 35 687 IPR044974 GO:0006952
Lapu1g00162 707 Gene3D - 338 422 IPR042197 -
Lapu1g00162 707 Pfam Leucine rich repeat 581 637 IPR001611 GO:0005515
Lapu1g00162 707 Gene3D - 148 333 IPR027417 -
Lapu1g00162 707 SUPERFAMILY L domain-like 501 705 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00162 Lapu-Chr1 7216311 7218433 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00162 581 676 WRKY Transcription Factor Family AT4G12020 32.323 2.34e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00162 - - pvu:PHAVU_001G134400g 1140.95