Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00158 ATGGGGACTCCGGAATTCGCAAATCTCGGCAAGCATTGTTCTGTTTCCGATTGCAGGCAGCTTGATTTCTTGCCCTTCACATGCGATCGCTGTAATCAGATATATTGTTTGGAGCACCGAGGTTATATTGAACACAAGTGCACGAAGCCCAACAGAGAAGATGTCACAGTTGTCATATGTCCTCTGTGTGCGAAAGGAGTTCGCCTAATTCCAGATCAAGATCCCAACATAACTTGGGACCATCATGTTAACATTGACTGTGACCCATCAAATTACGAAAAAGTAACAAAGAAGAGAAAATGCCCTGCCCCTGGATGCAGAGAGGTATTGGTATTCTCCAACACAATAAAGTGCAGGGATTGCTTGGAAGACCATTGTTTGAAGCACCGGTTCGGCACTGATCACAAATGTTCCGGTCCCAAAAAGTTGGAGACAAGTTTTTCATTCATTGGTTTCTTTAATACGAGTAAAAAAGAGGAGCCAAAGCCTAATAATTTCACTTCAACAGCATCATCTAACTGGACTTCAAGCTTTCTCAAGGTGGCTTCTGATATTCGTGCCTCAGCTGAAGCGGGCGTGTCAAAATTGAGCAATGACATTAACCAAGCTTGGCAGGCTGCTAGGGATGGTGTGGGACAGAGCAATGGCAGTGGAAATAAAAATGATCATCGTGAGGAGCATTGCCCTCAATGTGGTGTAAAGTTTTTGTCTGCAACTTCTTTGGTGGATCATCTGCAAAAAGTTCATGAAAGCAATGGGAAACGATTAGGGGATAAGAAGATTGATGCATGCCCCAAGTGTAGTAGAGGGTTTGTAGATCCGGTCTCCCTTGTGGAGCACGTTGAGAGGGTTCATGGTGGTGGTTCTGGAGCATAG 876 0.4463 MGTPEFANLGKHCSVSDCRQLDFLPFTCDRCNQIYCLEHRGYIEHKCTKPNREDVTVVICPLCAKGVRLIPDQDPNITWDHHVNIDCDPSNYEKVTKKRKCPAPGCREVLVFSNTIKCRDCLEDHCLKHRFGTDHKCSGPKKLETSFSFIGFFNTSKKEEPKPNNFTSTASSNWTSSFLKVASDIRASAEAGVSKLSNDINQAWQAARDGVGQSNGSGNKNDHREEHCPQCGVKFLSATSLVDHLQKVHESNGKRLGDKKIDACPKCSRGFVDPVSLVEHVERVHGGGSGA* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00158 291 SMART c2h2final6 262 285 IPR013087 -
Lapu1g00158 291 SMART c2h2final6 226 249 IPR013087 -
Lapu1g00158 291 ProSiteProfiles Zinc finger C2H2 type domain profile. 262 290 IPR013087 -
Lapu1g00158 291 SUPERFAMILY AN1-like Zinc finger 7 50 IPR035896 -
Lapu1g00158 291 ProSitePatterns Zinc finger C2H2 type domain signature. 228 249 IPR013087 -
Lapu1g00158 291 Gene3D Classic Zinc Finger 199 288 - -
Lapu1g00158 291 SUPERFAMILY beta-beta-alpha zinc fingers 227 281 IPR036236 -
Lapu1g00158 291 ProSiteProfiles Zinc finger C2H2 type domain profile. 226 254 IPR013087 -
Lapu1g00158 291 Gene3D - 2 60 IPR035896 -
Lapu1g00158 291 Gene3D - 87 170 IPR035896 -
Lapu1g00158 291 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Lapu1g00158 291 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Lapu1g00158 291 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Lapu1g00158 291 ProSitePatterns Zinc finger C2H2 type domain signature. 264 285 IPR013087 -
Lapu1g00158 291 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Lapu1g00158 291 Pfam AN1-like Zinc finger 13 50 IPR000058 GO:0008270
Lapu1g00158 291 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 252 - -
Lapu1g00158 291 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Lapu1g00158 291 SUPERFAMILY AN1-like Zinc finger 93 143 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00158 Lapu-Chr1 7102840 7104559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00158 1 291 C2H2 Transcription Factor Family AT2G41835 58.362 1.47e-113 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu1g00158 zf-AN1 8.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00158 - - gmx:100806459 519.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00158 1 7102840 7104559 Lapu1g00158 1 7102840 7104559 ECH
Lapu1g00158 1 7102840 7104559 Lapu7g00287 7 3470794 3474144 PCT