Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00146 ATGGATACTTGCAAGAAGTCCCCCTTGAAGCCATGGAAGAAAGGGACAACGAGGGGGAAAGGTGGCCCCCAGAATGCGTCGTGCGAGTACCGAGGTGTTAGGCAGAGAACATGGGGCAAATGGGTTGCTGAGATAAGAGAGCCAAAGAAGAGAACCAGACTCTGGCTTGGTTCTTTTACCACTGCTGAAGAAGCTGCCATGGCTTATGATGAGGCTGCAAGGAGACTCTATGGACCAGATGCATACCTCAATCTTCCCCTCCTGCAGCCAAGGTCTACTTCACCTATCACACCAGGAAAGTTCAAATGGTTCCCTTCCAAGAACTTCATTTCAATGTTCCCTGCCTGTGGATTACTCAATGTAAATGCTCAACCTAGTGTTCATTTAATCCATCAGAGGCTACAAGAGCTTAAGCAAAATTCAGCCGTGAGGCAATCCCCAAAGAGTTCATCCAATGATTCAGAGGCAGAAATTCAGAATGTGGACAGCTCGAATCAAGGACAAAATCCTCTAAAAGACACTCAAACATCATCATCACAGGTTCTTGGAGATCTTCAAGAGAAACCCCAGATAGACCTCCATGAGTTTCTTCAACAGCTGGGAATACTTAAAGAAGAAAGACAGTCAGACGGAACTGATAGCACAGAAAGTTCACCAGTGCCTGAAGCTGAGCTGAGAGATGACAATGATGAATTGGCAGTGTTTTCTGACACGAGTATTAACTGGGAGGCATTGATAGAGATGCATGGAATTGCAGGTATTCAGGAATCTGAATCCACAGAGTTTGGAGCATATGGCCCAAATGATGATCTTAGTTTCTCAGCTAGCATTTGGAACTTCTAA 843 0.4531 MDTCKKSPLKPWKKGTTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFTTAEEAAMAYDEAARRLYGPDAYLNLPLLQPRSTSPITPGKFKWFPSKNFISMFPACGLLNVNAQPSVHLIHQRLQELKQNSAVRQSPKSSSNDSEAEIQNVDSSNQGQNPLKDTQTSSSQVLGDLQEKPQIDLHEFLQQLGILKEERQSDGTDSTESSPVPEAELRDDNDELAVFSDTSINWEALIEMHGIAGIQESESTEFGAYGPNDDLSFSASIWNF* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00146 280 CDD AP2 28 86 IPR001471 GO:0003700|GO:0006355
Lapu1g00146 280 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Lapu1g00146 280 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Lapu1g00146 280 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 243 - -
Lapu1g00146 280 FunFam Ethylene-responsive transcription factor 2 28 87 - -
Lapu1g00146 280 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Lapu1g00146 280 MobiDBLite consensus disorder prediction 1 27 - -
Lapu1g00146 280 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Lapu1g00146 280 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Lapu1g00146 280 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Lapu1g00146 280 MobiDBLite consensus disorder prediction 138 181 - -
Lapu1g00146 280 MobiDBLite consensus disorder prediction 204 227 - -
Lapu1g00146 280 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00146 Lapu-Chr1 6777531 6778373 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00146 5 280 AP2-EREBP Transcription Factor Family AT3G57600 53.873 1.73e-87 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu1g00146 AP2 8.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00146 - - var:108328773 478.789