Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00140 ATGGCTGACCCCTACTCCAATTTTTTCTCATCATCGCCCTTCTTCCGTTTCAATCACCATTTCCCATCTTCAAACCCTTCTCCTCACGCTCCCTATGTCCACCACAACTTCATCAACCACTCCAAAACCAGCGACACCACCTTTTTCCACTACCACCACCACCACAACCATACCTCTTCCACCACTACTGCTTTTTCTTCTTTTCCTCCTTCCCCTCCTTTGAGAGAAGAGCTACCCCTCTTGAGACTGAGTCCGGCCAAGCAAGAGGAGGAGGAGGAAGACATGTCTTGCACTGGAGCCATGGATGTGGAGGAGAGGATCCACATCCACCCCAAAGAGGAAGAGGATGATGACGATGGCACTGTCACTGTTGCACTTCACATAGGGTTGCCAAGCCCTAGTGCTGCTGAGATGGCTTCTGTGCTCTCTTCTTCCTCGGAGACCACTGACAAAGATCACGGAGATGGTGCTGCTGAGGATTCTTCTGCTGGCTTCAGACTCAACAAGGGCCAGTACTGGATCCCTACCCCTTCTCAGATTCTCATTGGCCCTACCCAGTTCTCTTGCCCTGTTTGCTGCAAAACTTTCAACAGATACAACAACATGCAGATGCACATGTGGGGGCATGGATCACAGTACAGAAAAGGACCTGAATCTCTGAGGGGTACCCAACCAACGGGCATGCTGAGGCTTCCTTGCTATTGTTGTGCCCCAGGGTGCAGAAACAATATTGATCATCCAAGATCAAAGCCTCTCAAAGACTTTAGAACACTTCAAACGCATTACAAGAGAAAGCATGGGATTAAGCCCTTCATGTGCAGGAAATGCGGAAAGGCTTTTGCAGTGAGGGGGGATTGGAGGACTCATGAGAAGAACTGTGGGAAGCTTTGGTACTGCATCTGCGGCTCCGATTTCAAGCACAAGAGATCTCTTAAAGACCATATCAAAGCTTTTGGGAGTGGACATGCAGCTTATGGAATCGATGGTTTCGAAGAAGAAGATGAGCCAGCATCTGAAATAGAGCAAGATAATGATGATTCCACCCAGTGA 1050 0.4895 MADPYSNFFSSSPFFRFNHHFPSSNPSPHAPYVHHNFINHSKTSDTTFFHYHHHHNHTSSTTTAFSSFPPSPPLREELPLLRLSPAKQEEEEEDMSCTGAMDVEERIHIHPKEEEDDDDGTVTVALHIGLPSPSAAEMASVLSSSSETTDKDHGDGAAEDSSAGFRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRSKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEDEPASEIEQDNDDSTQ* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00140 349 ProSitePatterns Zinc finger C2H2 type domain signature. 189 209 IPR013087 -
Lapu1g00140 349 MobiDBLite consensus disorder prediction 135 162 - -
Lapu1g00140 349 SMART c2h2final6 271 291 IPR013087 -
Lapu1g00140 349 SMART c2h2final6 187 209 IPR013087 -
Lapu1g00140 349 Gene3D Classic Zinc Finger 186 209 - -
Lapu1g00140 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 187 214 IPR013087 -
Lapu1g00140 349 Gene3D Classic Zinc Finger 249 324 - -
Lapu1g00140 349 PANTHER ZINC FINGER PROTEIN WIP2 38 345 IPR043584 GO:0003700|GO:0010468
Lapu1g00140 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 271 291 IPR013087 -
Lapu1g00140 349 SUPERFAMILY beta-beta-alpha zinc fingers 252 291 IPR036236 -
Lapu1g00140 349 FunFam Zinc finger protein WIP2 240 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00140 Lapu-Chr1 6581321 6583985 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00140 1 346 C2H2 Transcription Factor Family AT3G57670 61.082 1.91e-145 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu1g00140 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00140 - - gmx:100802907 566.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00140 1 6581321 6583985 Lapu1g00140 1 6581321 6583985 ECH
Lapu1g00140 1 6581321 6583985 Lapu5g00334 5 2768637 2770946 ECH