Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lapu1g00138 | ATGGAGACAGAGAACGGTGACACGAAGTCCAAAAAGATGGAAGACTATGAAGTGATAGAGCAAATTGGAAGAGGGGCTTTTGGCTCTGCCTTCCTCGTTCTTCACAAGTCCGAGAAAAAGAGGTATGTGCTGAAAAAGATTCGGTTGGCCAAACAGACAGAGAAGTTCAAACGTACTGCACACCAAGAGATGAACCTGATTGCAAAACTGAATAACCCATACATTGTGGAGTACAAAGATGCTTGGGTGGAGAAGGAGGACCACATATGCATAATAACTGGCTATTGTGAAGGAGGTGACATGGCAGAGAACATAAAGAAAGCTCGAGGGTCATTTTTTCCTGAGGAGAAAGTCTGCAAATGGCTGACTCAGTTGTTGATAGCTGTGGACTACTTGCACTCTAATCGTGTAATCCACAGAGATCTTAAGTGTTCCAACATATTCCTCACCAAAGACAACAACATTCGGCTTGGTGACTTTGGTCTTGCAAAGCGACTTAATGCAGAAGACCTTACTTCCTCGGTTGTGGGAACTCCAAATTACATGTGTCCTGAGCTCCTCGCTGATATACCTTATGGTTATAAATCAGATATGTGGTCTCTTGGTTGCTGCATGTTTGAGATTGCTGGACATCAACCAGCATTTCGTGCTCCAGACATGGCTGGACTTATCAATAAAATAAACAGATCCTGCATTTCTCCACTGCCAATTGTTTATTCTTCCACACTGAAACAACTTATCAAGAGCATGCTTAGGAAAAACCCAGAGCATAGGCCAACTGCAGCTGAATTGTTAAGGCATCCGCTTTTACAACCTTATGTTCTTCGTTGTCATAATGCATCGTCTAATATTCTTCCAGTATATCCCATAGTAAATTCAAAGGATAAAACAAGAAGATCTACTAAATCTAGTGGTGGCAAGGACCACAAGGACAAAGAAGCAAACTTAGTAAATCGTTTGGAACGGATTCATCCAATTGAGGGAAATGGAGATATACACGTAAGCAATCTTCCTAATGATGCTGTAACAATCTCAACCAGTGCAGAAGATAATATTGAGACCAGGACGGTTGATCTTACAAGCTACATAGTGGAATCTTCTACTAGTATTAGTGACTCAAAAGATGGGTCAACAACATCTGAATCAACTATTTGCAGTGTGTGCAAGGAGGACTTTAAAAGTAGACCTGCAAGGGAAACGGCTAACAACGGAGTCTCTTTGAAGAATACACAAGAATCTCTACATGAAGAACAAATATTTTCTGCTAAACATTTTCATAAATTAGAAGATGACATTAATGCAGTGACCATAGAAGTTGAAGATGATTCTTGCAATGAAGGTTTGGATAATGCTGAGGCACTGAGGGAAGATTCGAACCTTGACAACTCTGGTAAATCAACCATGTCCAGTGCAGGCAGTAGCAGCACAGATAAAGATAAGTCCATCAATGAGGAAAGGCCATCACTAACTGTGAATCCTGTTCGGGTTGGACATGTTACTGAATCTGGAAACCACTTGAATGTATTTACGGAAGGCTCACATATGAACTGCTTGACATCTGATTGTAATGATGCACGTCTAGTTAAGGAAGATGACACAGCTAACACACACAGTCTCTCCACACATAAAGATGATAACACGGTGGAGGTTGATCGGACAAGTGGCGTTTCATTGAGTGTAGTAACAGAAGTCGATGGTGATGAGACAACTCTGTTGGATAGTCCCTGCCAGCAAAGAGCTGATGCTCTGGAATCTCTGCTGGAATTATGTGCTCAGCTACTCAAGCAAGATAAACTTGAAGAGCTTGCTGGGGTTCTGAGACCATTTGGGAAAGAAGCTGTATCGTCAAGAGAAACAGCAATATGGCTGGCAAAAAGCCTCATAACTGCCCAAAAATTTAATCCTGAAACCTAG | 1914 | 0.4164 | METENGDTKSKKMEDYEVIEQIGRGAFGSAFLVLHKSEKKRYVLKKIRLAKQTEKFKRTAHQEMNLIAKLNNPYIVEYKDAWVEKEDHICIITGYCEGGDMAENIKKARGSFFPEEKVCKWLTQLLIAVDYLHSNRVIHRDLKCSNIFLTKDNNIRLGDFGLAKRLNAEDLTSSVVGTPNYMCPELLADIPYGYKSDMWSLGCCMFEIAGHQPAFRAPDMAGLINKINRSCISPLPIVYSSTLKQLIKSMLRKNPEHRPTAAELLRHPLLQPYVLRCHNASSNILPVYPIVNSKDKTRRSTKSSGGKDHKDKEANLVNRLERIHPIEGNGDIHVSNLPNDAVTISTSAEDNIETRTVDLTSYIVESSTSISDSKDGSTTSESTICSVCKEDFKSRPARETANNGVSLKNTQESLHEEQIFSAKHFHKLEDDINAVTIEVEDDSCNEGLDNAEALREDSNLDNSGKSTMSSAGSSSTDKDKSINEERPSLTVNPVRVGHVTESGNHLNVFTEGSHMNCLTSDCNDARLVKEDDTANTHSLSTHKDDNTVEVDRTSGVSLSVVTEVDGDETTLLDSPCQQRADALESLLELCAQLLKQDKLEELAGVLRPFGKEAVSSRETAIWLAKSLITAQKFNPET* | 638 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lapu1g00138 | 637 | Gene3D | Transferase(Phosphotransferase) domain 1 | 98 | 325 | - | - | |
Lapu1g00138 | 637 | CDD | STKc_Nek | 15 | 270 | - | - | |
Lapu1g00138 | 637 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 137 | 149 | IPR008271 | GO:0004672|GO:0006468 | |
Lapu1g00138 | 637 | SUPERFAMILY | Protein kinase-like (PK-like) | 13 | 302 | IPR011009 | - | |
Lapu1g00138 | 637 | FunFam | serine/threonine-protein kinase Nek6 isoform X2 | 96 | 284 | - | - | |
Lapu1g00138 | 637 | ProSiteProfiles | Protein kinase domain profile. | 16 | 270 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lapu1g00138 | 637 | Pfam | Protein kinase domain | 16 | 269 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lapu1g00138 | 637 | SMART | serkin_6 | 16 | 270 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lapu1g00138 | 637 | ProSitePatterns | Protein kinases ATP-binding region signature. | 22 | 45 | IPR017441 | GO:0005524 | |
Lapu1g00138 | 637 | Gene3D | Phosphorylase Kinase; domain 1 | 1 | 95 | - | - | |
Lapu1g00138 | 637 | MobiDBLite | consensus disorder prediction | 460 | 477 | - | - | |
Lapu1g00138 | 637 | FunFam | Serine/threonine-protein kinase Nek6 | 1 | 95 | - | - | |
Lapu1g00138 | 637 | MobiDBLite | consensus disorder prediction | 454 | 491 | - | - | |
Lapu1g00138 | 637 | PANTHER | SERINE/THREONINE-PROTEIN KINASE NEK | 13 | 588 | - | - | |
Lapu1g00138 | 637 | MobiDBLite | consensus disorder prediction | 295 | 314 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lapu1g00138 | Lapu-Chr1 | 6516446 | 6522732 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lapu1g00138 | 9 | 271 | MAP Kinase Kinase Kinase | AT3G13530 | 33.208 | 5.92e-38 | 149 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | NEK | Lapu1g00138 | Pkinase | 1e-67 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lapu1g00138 | K08857 | - | gmx:100793379 | 1067.76 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lapu1g00138 | 1 | 6516446 | 6522732 | Lapu1g00138 | 1 | 6516446 | 6522732 | ECH | |
Lapu1g00138 | 1 | 6516446 | 6522732 | Lapu7g00231 | 7 | 2605081 | 2613504 | PCT |