LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu1g00138	ATGGAGACAGAGAACGGTGACACGAAGTCCAAAAAGATGGAAGACTATGAAGTGATAGAGCAAATTGGAAGAGGGGCTTTTGGCTCTGCCTTCCTCGTTCTTCACAAGTCCGAGAAAAAGAGGTATGTGCTGAAAAAGATTCGGTTGGCCAAACAGACAGAGAAGTTCAAACGTACTGCACACCAAGAGATGAACCTGATTGCAAAACTGAATAACCCATACATTGTGGAGTACAAAGATGCTTGGGTGGAGAAGGAGGACCACATATGCATAATAACTGGCTATTGTGAAGGAGGTGACATGGCAGAGAACATAAAGAAAGCTCGAGGGTCATTTTTTCCTGAGGAGAAAGTCTGCAAATGGCTGACTCAGTTGTTGATAGCTGTGGACTACTTGCACTCTAATCGTGTAATCCACAGAGATCTTAAGTGTTCCAACATATTCCTCACCAAAGACAACAACATTCGGCTTGGTGACTTTGGTCTTGCAAAGCGACTTAATGCAGAAGACCTTACTTCCTCGGTTGTGGGAACTCCAAATTACATGTGTCCTGAGCTCCTCGCTGATATACCTTATGGTTATAAATCAGATATGTGGTCTCTTGGTTGCTGCATGTTTGAGATTGCTGGACATCAACCAGCATTTCGTGCTCCAGACATGGCTGGACTTATCAATAAAATAAACAGATCCTGCATTTCTCCACTGCCAATTGTTTATTCTTCCACACTGAAACAACTTATCAAGAGCATGCTTAGGAAAAACCCAGAGCATAGGCCAACTGCAGCTGAATTGTTAAGGCATCCGCTTTTACAACCTTATGTTCTTCGTTGTCATAATGCATCGTCTAATATTCTTCCAGTATATCCCATAGTAAATTCAAAGGATAAAACAAGAAGATCTACTAAATCTAGTGGTGGCAAGGACCACAAGGACAAAGAAGCAAACTTAGTAAATCGTTTGGAACGGATTCATCCAATTGAGGGAAATGGAGATATACACGTAAGCAATCTTCCTAATGATGCTGTAACAATCTCAACCAGTGCAGAAGATAATATTGAGACCAGGACGGTTGATCTTACAAGCTACATAGTGGAATCTTCTACTAGTATTAGTGACTCAAAAGATGGGTCAACAACATCTGAATCAACTATTTGCAGTGTGTGCAAGGAGGACTTTAAAAGTAGACCTGCAAGGGAAACGGCTAACAACGGAGTCTCTTTGAAGAATACACAAGAATCTCTACATGAAGAACAAATATTTTCTGCTAAACATTTTCATAAATTAGAAGATGACATTAATGCAGTGACCATAGAAGTTGAAGATGATTCTTGCAATGAAGGTTTGGATAATGCTGAGGCACTGAGGGAAGATTCGAACCTTGACAACTCTGGTAAATCAACCATGTCCAGTGCAGGCAGTAGCAGCACAGATAAAGATAAGTCCATCAATGAGGAAAGGCCATCACTAACTGTGAATCCTGTTCGGGTTGGACATGTTACTGAATCTGGAAACCACTTGAATGTATTTACGGAAGGCTCACATATGAACTGCTTGACATCTGATTGTAATGATGCACGTCTAGTTAAGGAAGATGACACAGCTAACACACACAGTCTCTCCACACATAAAGATGATAACACGGTGGAGGTTGATCGGACAAGTGGCGTTTCATTGAGTGTAGTAACAGAAGTCGATGGTGATGAGACAACTCTGTTGGATAGTCCCTGCCAGCAAAGAGCTGATGCTCTGGAATCTCTGCTGGAATTATGTGCTCAGCTACTCAAGCAAGATAAACTTGAAGAGCTTGCTGGGGTTCTGAGACCATTTGGGAAAGAAGCTGTATCGTCAAGAGAAACAGCAATATGGCTGGCAAAAAGCCTCATAACTGCCCAAAAATTTAATCCTGAAACCTAG	1914	0.4164	METENGDTKSKKMEDYEVIEQIGRGAFGSAFLVLHKSEKKRYVLKKIRLAKQTEKFKRTAHQEMNLIAKLNNPYIVEYKDAWVEKEDHICIITGYCEGGDMAENIKKARGSFFPEEKVCKWLTQLLIAVDYLHSNRVIHRDLKCSNIFLTKDNNIRLGDFGLAKRLNAEDLTSSVVGTPNYMCPELLADIPYGYKSDMWSLGCCMFEIAGHQPAFRAPDMAGLINKINRSCISPLPIVYSSTLKQLIKSMLRKNPEHRPTAAELLRHPLLQPYVLRCHNASSNILPVYPIVNSKDKTRRSTKSSGGKDHKDKEANLVNRLERIHPIEGNGDIHVSNLPNDAVTISTSAEDNIETRTVDLTSYIVESSTSISDSKDGSTTSESTICSVCKEDFKSRPARETANNGVSLKNTQESLHEEQIFSAKHFHKLEDDINAVTIEVEDDSCNEGLDNAEALREDSNLDNSGKSTMSSAGSSSTDKDKSINEERPSLTVNPVRVGHVTESGNHLNVFTEGSHMNCLTSDCNDARLVKEDDTANTHSLSTHKDDNTVEVDRTSGVSLSVVTEVDGDETTLLDSPCQQRADALESLLELCAQLLKQDKLEELAGVLRPFGKEAVSSRETAIWLAKSLITAQKFNPET*	638

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lapu1g00138	637	Gene3D	Transferase(Phosphotransferase) domain 1	98	325	-	-
Lapu1g00138	637	CDD	STKc_Nek	15	270	-	-
Lapu1g00138	637	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	137	149	IPR008271	GO:0004672\|GO:0006468
Lapu1g00138	637	SUPERFAMILY	Protein kinase-like (PK-like)	13	302	IPR011009	-
Lapu1g00138	637	FunFam	serine/threonine-protein kinase Nek6 isoform X2	96	284	-	-
Lapu1g00138	637	ProSiteProfiles	Protein kinase domain profile.	16	270	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Lapu1g00138	637	Pfam	Protein kinase domain	16	269	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Lapu1g00138	637	SMART	serkin_6	16	270	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Lapu1g00138	637	ProSitePatterns	Protein kinases ATP-binding region signature.	22	45	IPR017441	GO:0005524
Lapu1g00138	637	Gene3D	Phosphorylase Kinase; domain 1	1	95	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu1g00138	Lapu-Chr1	6516446	6522732	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu1g00138	9	271	MAP Kinase Kinase Kinase	AT3G13530	33.208	5.92e-38	149

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NEK	Lapu1g00138		Pkinase	1e-67	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu1g00138	K08857		-	gmx:100793379	1067.76

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lapu1g00138	1	6516446	6522732	Lapu1g00138	1	6516446	6522732	ECH
	Lapu1g00138	1	6516446	6522732	Lapu7g00231	7	2605081	2613504	PCT

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