Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00134 ATGTTTCCGACCAATTATGGTTTCACATATGTTCAGCCTACTGTTGCTGCTTCTGAAGGATCCTCAGTTTTGGATGAGAGGAACAAAGAGTCTCGAACATATGAGGGAGTTCGAAAAGTCACGGATAAATCAATCTATATAGCTGAAGTACGTGAGAATGATGAAACCAAGAGCGACCAAATAAGTAAATTTGACAATGACGTAAATGCAGCCAGAGCTCATGACTTGGTGGCTCTGAAACTTGGGGGATCTGGTGTAAAAACAAACTTTCCAGAAAGTCAATACAAGACAGTACTGGAGGCTATGACTGATATGTCAAAAGCGGAAGTTGTGGATTCTGTCAGAATGTTAAGTTTCAGTTTTACCAAGTGCATATCCATGTATCGTGGAGTCTCCAGAGATTTCTCAACTGGGAAATGGCAATCAGATTTTGATAAAGGCAACGACGACCGCATCTTCATTGGATTATTCGACACAGAAGTGGAAGCAGCAAGGGCTTATGATGTTGAGAGCGTAAGGCAGAAAGGGCTCAACGCCATTACTAATTTCAGTATCAGGTTTTATAACGTTGATGCCATTTTGCTTGGAGAAACTGATCATGAAAAAGTGATGTATCAGACAAAAGTCACTGTCCCTGTGGATCCAATGCAGCATTTTGAAGTGTTTCAGAACATTACTGGCCAAGGCTCCTCAACAATGCTATACGGTAGTGCAGGCAATGTGAACAGTGTGGGGGTGCAAGAATTTCAAATTCCATTAATGTCAGGAAACACAGAAGAACAGGCAAAGTTTGTGACATTGGCCCCATTACAAAGCAATAGCACTACTACAAATGTGCCCTTAGAAAGAGAAAATGATACTACAAGAAATGTGGTCTGTGAAAGTGAAGAGGGTAATGGTCAGAGAATCACGGCCAAGACAAGGTTCAATGCTTATAAGAAATTCATCAAGAGGCCTAGACCAAGTTGA 969 0.4128 MFPTNYGFTYVQPTVAASEGSSVLDERNKESRTYEGVRKVTDKSIYIAEVRENDETKSDQISKFDNDVNAARAHDLVALKLGGSGVKTNFPESQYKTVLEAMTDMSKAEVVDSVRMLSFSFTKCISMYRGVSRDFSTGKWQSDFDKGNDDRIFIGLFDTEVEAARAYDVESVRQKGLNAITNFSIRFYNVDAILLGETDHEKVMYQTKVTVPVDPMQHFEVFQNITGQGSSTMLYGSAGNVNSVGVQEFQIPLMSGNTEEQAKFVTLAPLQSNSTTTNVPLERENDTTRNVVCESEEGNGQRITAKTRFNAYKKFIKRPRPS* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00134 322 ProSiteProfiles AP2/ERF domain profile. 33 91 IPR001471 GO:0003700|GO:0006355
Lapu1g00134 322 ProSiteProfiles AP2/ERF domain profile. 127 184 IPR001471 GO:0003700|GO:0006355
Lapu1g00134 322 Pfam AP2 domain 128 168 IPR001471 GO:0003700|GO:0006355
Lapu1g00134 322 CDD AP2 126 183 IPR001471 GO:0003700|GO:0006355
Lapu1g00134 322 SUPERFAMILY DNA-binding domain 126 185 IPR016177 GO:0003677
Lapu1g00134 322 SUPERFAMILY DNA-binding domain 33 92 IPR016177 GO:0003677
Lapu1g00134 322 SMART rav1_2 33 97 IPR001471 GO:0003700|GO:0006355
Lapu1g00134 322 SMART rav1_2 127 190 IPR001471 GO:0003700|GO:0006355
Lapu1g00134 322 Gene3D AP2/ERF domain 33 92 IPR036955 GO:0003700|GO:0006355
Lapu1g00134 322 Gene3D AP2/ERF domain 127 186 IPR036955 GO:0003700|GO:0006355
Lapu1g00134 322 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 29 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00134 Lapu-Chr1 6426014 6428425 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00134 23 194 AP2-EREBP Transcription Factor Family AT1G51190 38.462 4.29e-33 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu1g00134 AP2 8.9e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00134 K09285 - gmx:102664631 333.954