Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00129 ATGGAGCAAGTTCCTGTAGGATTACGCGGATCCGTGCACGACGGAGCCACACTCGAGTCCATTCAATTCAACGAAGAAATTCAGGGAATCATGGCGCCGGCACCGGCGCCGGAAAACGCCAGCTCATTCACCGCGCTGCTCGAGCTCCCGCCCACGCAGGCGGTGGAGCTCCTTCACTCGCCAGACTCTGACGGAGCTCAGAAACAGCCTAATTGCCACGTCAGCGCTAATCACAAACCCTATTTGCTCAACTCTTTCGGTGGCAATTTGACCTTTCCTTCCAACGCCGCCTTAATTGAACGCGCCGCCAAGTTTTCCGTATTCGCCGGTCAAAACTCGCCGTCGTCGGGGGAGGCACATCTGCTTCCAACCGGGTCTGGTTTGAAGTTGGATAGTGTGAAGATCGAGCCGCTAGAGACCGATTCAAACCCGTGCTCGACGCAAGGATGCGTTTCGGATCCCGCGGTGGAACACAAGAACGAGAGGACCGCAAAGAGAAAGGAGCGAGAGAAGAAAGTAATGGTTAAAGGATCGTCGAAGAAGAGTAAGAGCGTCGCCGATGAGACCTCCGGCGACGGTGAGAAACTTCCCTACGTCCACGTTCGAGTTCGTCGAGGTCAAGCGACAGATAGCCATAGTTTGGCAGAGAGGGCTAGGAGAGAGAAGATTAATGCTAGGATGAAGCTTTTACAAGAGCTGGTCCCGGGCTGCGACAAGATATCAGGAACGGCAATGGTTCTAGATGAAATCATCAACCATGTGCAATCTCTGCAGCGTCAAGTGGAGATTTTATCAATGAAACTAGCAGCAGTTAACCCAAGAATTGATTTCAGCCTTGACAACTTATTGGCTACTGATGGGGCATCTCTAATGGACAGTAACATACCTAGCATGATGACACCTCTCATGTGGCCAGAAATCCCAGTCAATGGAAACCGGCAGCATTATCAACAACAGTGGCAATTCGATGCATTCCACCAACCACTATGGGAGAGGGAGGAAGTCAACAATAATTTCATGACTCCGGAAAACTCACTTTTGAGTTATGACTCGTCGGCAAACTCAGCATCTCTGCACTCAAATCAATTGAAGATGGAGCTCTGA 1104 0.5091 MEQVPVGLRGSVHDGATLESIQFNEEIQGIMAPAPAPENASSFTALLELPPTQAVELLHSPDSDGAQKQPNCHVSANHKPYLLNSFGGNLTFPSNAALIERAAKFSVFAGQNSPSSGEAHLLPTGSGLKLDSVKIEPLETDSNPCSTQGCVSDPAVEHKNERTAKRKEREKKVMVKGSSKKSKSVADETSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCDKISGTAMVLDEIINHVQSLQRQVEILSMKLAAVNPRIDFSLDNLLATDGASLMDSNIPSMMTPLMWPEIPVNGNRQHYQQQWQFDAFHQPLWEREEVNNNFMTPENSLLSYDSSANSASLHSNQLKMEL* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00129 367 MobiDBLite consensus disorder prediction 155 193 - -
Lapu1g00129 367 MobiDBLite consensus disorder prediction 139 193 - -
Lapu1g00129 367 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 106 351 IPR024097 GO:0006355
Lapu1g00129 367 SMART finulus 213 263 IPR011598 GO:0046983
Lapu1g00129 367 Gene3D - 204 277 IPR036638 GO:0046983
Lapu1g00129 367 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 207 257 IPR011598 GO:0046983
Lapu1g00129 367 CDD bHLH_AtBPE_like 197 282 - -
Lapu1g00129 367 Pfam Helix-loop-helix DNA-binding domain 211 258 IPR011598 GO:0046983
Lapu1g00129 367 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 205 276 IPR036638 GO:0046983
Lapu1g00129 367 FunFam transcription factor bHLH48-like isoform X1 204 276 - -
Lapu1g00129 367 Coils Coil 247 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00129 Lapu-Chr1 6277544 6291816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00129 7 367 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 52.073 2.12e-108 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu1g00129 HLH 2.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00129 - - vun:114168708 647.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00129 1 6277544 6291816 Lapu1g00129 1 6277544 6291816 ECH
Lapu1g00129 1 6277544 6291816 Lapu7g00222 7 2520403 2529008 PCT