Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00127 ATGCCAATGCATCATCTTCTTATATCACTCTTTCTCTTCTTCGTCATTCCTCCAACCACCTCTATCAACTCCGACGGACTCTCCCTGTTGGCCCTGAAAGCCGCTGTGGACTCCGACCCCACCGGCGTCCTCAGCTCCTGGTCGGAAAACGACGCCACCGCATGCCACTGGCCCGGCGTGTCCTGCACCGGCGACAGAGTTACTCAACTTTCTCTCCCCGACAAGAACCTCAGCGGTTACATTCCCTCCGAACTGGGATTTCTCACCTTCCTCAAAAGACTAAGTCTTCCATACAACAACTTCTCCAACGTCATTCCTCCCTCTCTCTTCAACGCCACCACCCTCGTTGTCCTCGACCTCTCTCACAACTCGCTCTGCGGTTCCCTTCCCTCTCACTTTCTCCCCCTCAAGTTCCTTCGCCATTTGGACCTCTCCTCCAACTATCTCAACGGTTCCCTCCCTCCTACCCTCTCCGATCTCACTTCTCTCACCGGAACTCTTAATCTTTCTTTCAACCACTTCTCCGGCGGGATTCCGGCCACCCTTGCTAACCTACCTGTGGCTGTGAGCCTCGACCTCCGCAACAACAACCTCACCGGAAAAATCCCCCAGGTGGGGTCCCTGCTAAACCAGGGTCCCACCGCTTTTTCTGGCAACCCTGGACTATGTGGCTTCCCCTTGCAAACCGCGTGCCCCGAAGCGCAAAAGCCTGGGATTTTTGCCAACCCTGAAGAGGGTTTCCCTCAGAACCCCAATGCACTTCATCCCGAAGGCTCAGAACAGAGAGTGAAACCGCACGGTGGCAGCTCCGTCGCTGTTCTTGTCATCTCCGGGCTTTCCGTCGCAGTTGGAGCGGTTTCTCTCTCGCTGTGGGTTTTCCGGCGACGGTGGGGCGGCGAGGAGGGAAAATTGGGGGGCCAGAAGTTGGAGAGTGAGGTGGATGCGGGAGAGGGACAAGATGGCAAATTTGTTGTGGTTGATGAAGGGTTTGAGTTGGAGTTGGAGGATTTGCTTAGGGCTTCTGCGTATGTTGTTGGGAAGAGTAGGAGTGGGATTGTGTACAAGGTTGTCGGGGTCGGAAGAGGGTCTTCCGCGGCGGCGAATGTGGTGGCTGTTCGGCGACTCAGTGAGGGTGATGCCACGTGGCGATTTAAGGAGTTTGAGTCTGAAGTGGAGGCCATTGCAAGGGTTCGTCACCCCAATGTTGTTCCGTTGAGAGCTTATTATTATGCGCATGATGAGAAGCTGCTTATCACCGATTTCATTCGCAATGGAAGCTTATACACTGCTTTACACGGCGGACCTTCCAATTCATTGCCACCATTATCATGGGCTGCAAGGTTAAAAATTGCTCAAGAAGCAGCCAAGGGCTTGATGTATATACACGAGTTCAGTGGTCGCAAATATATCCATGGCAACATAAAGTCAACAAAAATCTTACTAGATGAAGAGCTCCATCCATACGTGTCAGGTTTTGGGCTTACTCGGCTTGGTTTGGGCCCGCCGAAGTCTACCACAGTGGCCCCAAAACGGAACAGTTTGAACCAATCTTCTATAACCACTGCAATGAGTTCAAAGGTTGCAGCTTCCTTTAACCACTACCTGGCACCTGAGGTGCGCATGGCTGGTGGCAAGGTCACTCAGAAATGTGATGTGTATTCGTTTGGCATAGTGCTTTTGGAACTTTTGACGGGTAGGATGCCTGATTTTGAAGCAGAAAATGATGAGAAGGTGCTGGAGAGTTTTGTGAGAAAAGCCTTCAGGGAGGAGCAGCCATTGTCTGATATCATTGACCAAGCACTCATCCCTGAAGTTTATGCTAAAAGGCAAGTCATTGCTGCATTCCATATTGCTCTGAACTGCACTGAACTCGATCCAGAGTTGCGACCAAGAATGAAAACCGTGTCAGAGAGCCTTGATCACATCAAATACAGTGAAAAACAAGAGAACCATGTATAG 1959 0.5151 MPMHHLLISLFLFFVIPPTTSINSDGLSLLALKAAVDSDPTGVLSSWSENDATACHWPGVSCTGDRVTQLSLPDKNLSGYIPSELGFLTFLKRLSLPYNNFSNVIPPSLFNATTLVVLDLSHNSLCGSLPSHFLPLKFLRHLDLSSNYLNGSLPPTLSDLTSLTGTLNLSFNHFSGGIPATLANLPVAVSLDLRNNNLTGKIPQVGSLLNQGPTAFSGNPGLCGFPLQTACPEAQKPGIFANPEEGFPQNPNALHPEGSEQRVKPHGGSSVAVLVISGLSVAVGAVSLSLWVFRRRWGGEEGKLGGQKLESEVDAGEGQDGKFVVVDEGFELELEDLLRASAYVVGKSRSGIVYKVVGVGRGSSAAANVVAVRRLSEGDATWRFKEFESEVEAIARVRHPNVVPLRAYYYAHDEKLLITDFIRNGSLYTALHGGPSNSLPPLSWAARLKIAQEAAKGLMYIHEFSGRKYIHGNIKSTKILLDEELHPYVSGFGLTRLGLGPPKSTTVAPKRNSLNQSSITTAMSSKVAASFNHYLAPEVRMAGGKVTQKCDVYSFGIVLLELLTGRMPDFEAENDEKVLESFVRKAFREEQPLSDIIDQALIPEVYAKRQVIAAFHIALNCTELDPELRPRMKTVSESLDHIKYSEKQENHV* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00127 652 Pfam Leucine rich repeat 91 149 IPR001611 GO:0005515
Lapu1g00127 652 Pfam Protein tyrosine and serine/threonine kinase 345 638 IPR001245 GO:0004672|GO:0006468
Lapu1g00127 652 FunFam Leucine-rich repeat receptor-like protein kinase 139 233 - -
Lapu1g00127 652 Gene3D Ribonuclease Inhibitor 137 232 IPR032675 -
Lapu1g00127 652 ProSiteProfiles Protein kinase domain profile. 339 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g00127 652 SUPERFAMILY L domain-like 25 228 - -
Lapu1g00127 652 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
Lapu1g00127 652 MobiDBLite consensus disorder prediction 244 263 - -
Lapu1g00127 652 FunFam Leucine-rich repeat receptor-like kinase 27 138 - -
Lapu1g00127 652 SUPERFAMILY Protein kinase-like (PK-like) 344 644 IPR011009 -
Lapu1g00127 652 Gene3D Ribonuclease Inhibitor 27 136 IPR032675 -
Lapu1g00127 652 Gene3D Transferase(Phosphotransferase) domain 1 422 652 - -
Lapu1g00127 652 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 10 646 IPR046959 -
Lapu1g00127 652 Gene3D Phosphorylase Kinase; domain 1 323 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00127 Lapu-Chr1 6185290 6188658 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00127 22 643 Receptor kinase-like Gene Family AT3G57830 58.777 0.0 717
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lapu1g00127 PK_Tyr_Ser-Thr 4.5e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00127 - - gmx:100796011 1085.86