Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00126 ATGGATTCGAATTCGCGTTACCAAGTTCACCAACAACACCAGCCCAATTCTGGCTTACTTCGCTTTCGCTCTGCCCCCACTCAAGTTCTCGCGAATTTCAAACAAGGCGAAGCTTCCATTAACGGGAACCCCTGGGAGGGTTCTGAACCACTTTTGAGATTCTTCAATTCCGGCGACACCCACGATACGACGTCGCCTACCTCACGAGAATTCGTGGATAACAAGGTTTCTAATGATAGTAAACAAGCGAAGGAGTCAACAATATCATCGTCATCGTTATCACCTCTGAGTCGCATGAATTCCCAGCAAGGTTATAGTACTTCTGTGTTACCCTCTCGGTACCCGAGGCACGACTCTAGTGTAACTGGTACTTCATCTATGATGGTGGGTTCCATGGGAATGGATCAGAGTGGCAAAAACTTTAATTCCAATCTTCTCAGGCAGAGTAGCTTCCCTTCTGGCAATTTCTCTAACAACATCTCCTTTCACAGCGGGTATGATGCCATGAAAGGTGTTGAAAACTTTGGTGGGGTTAATGGCAACGATGGTGAGCTTAGTCTATCTATGAACAGAATGAAGAATCACATTAGCTTCTCACCAAGGAGTCCTTCTTCCTTGGGAATGTTATCATCAACCTCCAAAATGGGCACGGAGGGTCTCAGGGTAACTAGCCCTGAGGATGGTAGACAGGGAGGTAGCAATGGTGATGCTCGATATTACGGCCCTGGATTCCCTTATGCTTCTTGGAATGAGACGTCAAGCCCCAAAAGACAGCGAAATAGTAATGATGAGTTACTTTCTGAAGCTCAGAATGGAGAGCTGGGAAATCAAGTGCATGCTCTTTCGCATCATTTGAGTTTGCCAAGAACGTCCTCGGAGATGTTTGCTATGGATAACTTGCTTCAGTTTAATGATTCTGTTCCTTGTAAAATCAGAGCAAAGAGAGGCTTTGCTACTCATCCTCGAAGCATCGCTGAAAGGGTGAGAAGAACTAGGATCAGTGAACGAATAAGAAAATTGCAAGAGCTTGTTCCAAACATGGAAAAGCAAACCAGCACAGCAGAGATGTTGGACTTGGCTGTAGACTACATAAAAAATCTTCAGAATCAATTCAAGACTCTGAGCGAAAGACGGGCTAAATGCAAATGTATAAACATGCAGAAATCAGAAACAGATAAAATTGGTTGA 1188 0.4444 MDSNSRYQVHQQHQPNSGLLRFRSAPTQVLANFKQGEASINGNPWEGSEPLLRFFNSGDTHDTTSPTSREFVDNKVSNDSKQAKESTISSSSLSPLSRMNSQQGYSTSVLPSRYPRHDSSVTGTSSMMVGSMGMDQSGKNFNSNLLRQSSFPSGNFSNNISFHSGYDAMKGVENFGGVNGNDGELSLSMNRMKNHISFSPRSPSSLGMLSSTSKMGTEGLRVTSPEDGRQGGSNGDARYYGPGFPYASWNETSSPKRQRNSNDELLSEAQNGELGNQVHALSHHLSLPRTSSEMFAMDNLLQFNDSVPCKIRAKRGFATHPRSIAERVRRTRISERIRKLQELVPNMEKQTSTAEMLDLAVDYIKNLQNQFKTLSERRAKCKCINMQKSETDKIG* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00126 395 MobiDBLite consensus disorder prediction 57 73 - -
Lapu1g00126 395 Coils Coil 330 350 - -
Lapu1g00126 395 MobiDBLite consensus disorder prediction 1 20 - -
Lapu1g00126 395 FunFam Transcription factor bHLH130 family 318 388 - -
Lapu1g00126 395 Pfam Helix-loop-helix DNA-binding domain 323 368 IPR011598 GO:0046983
Lapu1g00126 395 SMART finulus 323 373 IPR011598 GO:0046983
Lapu1g00126 395 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 86 390 - -
Lapu1g00126 395 CDD bHLH_AtbHLH_like 322 375 IPR045239 -
Lapu1g00126 395 MobiDBLite consensus disorder prediction 196 219 - -
Lapu1g00126 395 MobiDBLite consensus disorder prediction 196 237 - -
Lapu1g00126 395 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 320 384 IPR036638 GO:0046983
Lapu1g00126 395 MobiDBLite consensus disorder prediction 81 123 - -
Lapu1g00126 395 Gene3D - 319 391 IPR036638 GO:0046983
Lapu1g00126 395 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 317 367 IPR011598 GO:0046983
Lapu1g00126 395 MobiDBLite consensus disorder prediction 51 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00126 Lapu-Chr1 6173522 6176663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00126 1 373 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 42.199 1.43e-70 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu1g00126 HLH 3.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00126 - - gmx:100814652 590.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00126 1 6173522 6176663 Lapu1g00126 1 6173522 6176663 ECH
Lapu1g00126 1 6173522 6176663 Lapu7g02652 7 42698138 42699920 ECH
Lapu1g00126 1 6173522 6176663 Lapu7g00219 7 2463704 2467736 PCT