Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00105 ATGGCAGGAACTGCTTTCTACACCTCCTGTCTTTCCTCTTCCAGCAACTTAGGGAGATGTTGGTTGGTATTAAAAACTCACAATGCAAGGGCCCTGCCAGGGAAACTACCTGGAACTGGAATGAGAAGATTGGCAATAAAAGCAGAAGTGAAGTATGTGAACGCTGACAAGGCGAAGGAACTTGTAGAAGTGGATGGATATGCTGTTCTTGATGTGAGGGACAAAGCTCAATTTGAGCGAGCTCACATAAAATCTTGTAGTCATGTGCCTCTTTTTGTTGAAAACAAAGACAATGATCCCGGTACTATTATAAAAAGGCAGCTGCACAATAATTTTTCTGGGTTGTTCTTTGGGTTACCATTCACTAAGCCAAATGCTGATTTTATACAATCTGTTAAAAGCCAGTTTCCACCTGAAAGCAAACTCTTGGTTGTATGCCAGGAAGGACTGAGGTCTGCTGCAGCAGCAGATAAGTTAGAGAAAGCTGGTTTCGAAAATATAGCATGCATAACATCTGGCCTTCAAACTGTAAAACCAGGGACATTTGATTCTGTTGGGTCCACAGAGTTGGAGAATGCAGGCAAAGCTGGTTTGGTGACAATCCAAGGAAAAATCTCAACTGTGTTGGGAACTATTCTTGTTTGTGCATATTTATTCGTTACATTCTTCCCTGAGCAAGCAGAGAAGCTATTCCAATTGGCCCCTACAGGATAA 714 0.4216 MAGTAFYTSCLSSSSNLGRCWLVLKTHNARALPGKLPGTGMRRLAIKAEVKYVNADKAKELVEVDGYAVLDVRDKAQFERAHIKSCSHVPLFVENKDNDPGTIIKRQLHNNFSGLFFGLPFTKPNADFIQSVKSQFPPESKLLVVCQEGLRSAAAADKLEKAGFENIACITSGLQTVKPGTFDSVGSTELENAGKAGLVTIQGKISTVLGTILVCAYLFVTFFPEQAEKLFQLAPTG* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00105 237 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 9, CHLOROPLASTIC 1 236 IPR044615 -
Lapu1g00105 237 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 48 175 IPR036873 -
Lapu1g00105 237 FunFam Rhodanese-like domain-containing protein 9, chloroplastic 40 182 - -
Lapu1g00105 237 CDD RHOD 58 178 - -
Lapu1g00105 237 ProSiteProfiles Rhodanese domain profile. 63 186 IPR001763 -
Lapu1g00105 237 Pfam Rhodanese-like domain 55 175 IPR001763 -
Lapu1g00105 237 Gene3D - 41 182 IPR036873 -
Lapu1g00105 237 SMART rhod_4 53 183 IPR001763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00105 Lapu-Chr1 5846546 5850923 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00105 9 231 Sulfurtransferasese or Rhodanese AT2G42220 66.368 1.32e-108 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00105 - - vum:124827221 454.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00105 1 5846546 5850923 Lapu1g00105 1 5846546 5850923 ECH