Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00102 ATGGGTTCAGACGCTGCTGCCACCAAACTCTCCTCTTCTGAGTCCCTCAACGGTTTGAAATTTGGCCAAAAAATCTATTTTGAGGATGTGGGTCTGGCTACTCCAGCCACTTCTCTTACTTCTGCTGCTGCTGGTGTTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTTCAAGGAAAGGAAGAGGTGGGTCTGTTCAACCAGCTCAGCCTCCTAGGTGTCAAGTTGAAGGGTGTATGGTAGATCTGAGTGATGCTAAAGCTTACTATTCTAGGCACAAGGTCTGTGGCATGCACTCTAAATCCCCTACAGTCATTGTTGCTGGTCTTCAACAAAGGTTTTGTCAACAGTGTAGCAGATTTCACCAGCTTCCCGAGTTTGATCAAGGAAAAAGAAGTTGCCGCAGGCGACTAGCTGGCCATAATGAACGTCGGAGAAAGCCCCCACCCAGCTCCCTCTTAACCTCTCGCTATGCCAGACTTTCTTCATCTGCATTTGATAATAGTGGCAGAGGTGGCAACTTTCTGATGGAATTGGCTTCATATCCAAAGCTTAGTCTGAGAAATTCACTTCCAACTCCTAGATCATCCGAGCTAGCTCATGGAAATCAAACCTCTACACTTAGCTGGCACGGCAACTCAGAGACACCATCTGACATTTTCTTGCAAGGTTCGGTGGGTGGGACAAGCTTCGCTGGTCCTGGTCATCCTCCAGGGGAAAGTTACACCGGTGTCACTGACTCTAGGTGTGCTCTCTCTCTTCTGTCAAGTCAAACATGGGGTTCTAGAAACACAGCACCGAGTCTTGGGTTGAATAACATGATGAATTTCAATGGGACACCCATGACAGAACTTACTGCATCATCTCACGGTGCATCACTCCATGAACTTCCAAATACCTCGTGGTGTTTCAAGGGCATTGATTCTGGTAACTGTTCGCCTGAGGTTGTCCCTGATCTAGGTCTGGGTCATATTTCACAGCCTCTGGATGGTCAGCTTCATGGTGAGCTGGATCTGTCTCAACAGAGCAGGAGGCATTACATGGATCTAGAACAGTCCAGGGCATATGAATCTGCCCACTGGTCACTTTAA 1089 0.4757 MGSDAAATKLSSSESLNGLKFGQKIYFEDVGLATPATSLTSAAAGVSSSSSSSSSSSRKGRGGSVQPAQPPRCQVEGCMVDLSDAKAYYSRHKVCGMHSKSPTVIVAGLQQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPPPSSLLTSRYARLSSSAFDNSGRGGNFLMELASYPKLSLRNSLPTPRSSELAHGNQTSTLSWHGNSETPSDIFLQGSVGGTSFAGPGHPPGESYTGVTDSRCALSLLSSQTWGSRNTAPSLGLNNMMNFNGTPMTELTASSHGASLHELPNTSWCFKGIDSGNCSPEVVPDLGLGHISQPLDGQLHGELDLSQQSRRHYMDLEQSRAYESAHWSL* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00102 362 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 22 327 IPR044817 GO:0003677
Lapu1g00102 362 Gene3D - 63 134 IPR036893 GO:0003677|GO:0005634
Lapu1g00102 362 ProSiteProfiles Zinc finger SBP-type profile. 70 147 IPR004333 GO:0003677
Lapu1g00102 362 MobiDBLite consensus disorder prediction 41 71 - -
Lapu1g00102 362 FunFam Squamosa promoter-binding-like protein 14 64 134 - -
Lapu1g00102 362 MobiDBLite consensus disorder prediction 41 63 - -
Lapu1g00102 362 Pfam SBP domain 73 146 IPR004333 GO:0003677
Lapu1g00102 362 SUPERFAMILY SBT domain 71 152 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00102 Lapu-Chr1 5828175 5832725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00102 19 362 SBP-box Gene Family AT2G42200 45.699 3.57e-71 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lapu1g00102 SBP 1.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00102 - - gmx:100780949 645.966