Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00099 ATGGAAGATTTGAAGAAGAGAAAACTGGACGAAGCAGGAAACGGTGATTTTGCTTCCAAGGAAGAACTTCGCTTCCTCATTGAACCTCTTGCTAAGCCTCAGCTCGTTGATCTTCTAGCTAAACTAGGGTCCCAATATCCTTCAATAGCAGAAGAAATAAAAAGTATTGCAAGTGCAGATCCTGCCCATCGAAAGCTTTTTGTTCGTGGCTTGGCATGGAATACCACTTCAGAAACTTTGCGTGCTGCATTTGAAGAGCATGGAGAAATTGAGGAAGGAGCTGTGATCTATGATAAAGTAACAGGGAAGTCCCGTGGCTATGGATTTATCACTTTCAAAAATATGGAATCAACTCAGCAAGCATTGAGAGCTTCTAGCAAGTTAATTGACGGAAGATTGGCTGTCTGTAATCTAGCCTGTGAGGGTCTAAGTGGAACAAGCAGTGCTCCTGATCTTTCCCTGAGGAAGCTTTATATTGGAAGCTTATCACCAGAAGTCACAAGTGAAATGCTGCTTAACTATTTTGCGAGGCATGGTGAAATAGAAGAAGGTTCAGTTGCATATGACAGGGATACAAATGAGTCACGCACCAAGTCCGCCAACAAATTCGTCGGAAAAACCATCATAAAAGAAGCCCAAGCCGCATTGCTCGAGTACCTCCACTCCACGCGCAGCCTCAACTTCTTAGACGCCGACAACATGTGCAGAAACTCGCCCTCCTTCCTCCAGGACCTCCTCGCCAAAACCCACTCGCACACGCCGCGCGTGGACACCAAGCGCTCCATCTCGCGCTACCTCCGCTACCACCCCATCAACGAGTTCGAGCCCTTCTTCGAGAGCGCGGGTCTCTCCCCTTCCGAGTACGCGCCCCTTCTCCCGCCTCACATGATTTACCTAAACGACGATCTTCTGCTCATGGAGAATCACCACGCGCTCTGCAACTACGGCGTTCCCCGCACCAAGATGGGGAGGGTTTTCAAACTCGCGCCTCAGGTTTTTCGGTACGAACCCAGGGTTTTGATCTCAAAGCTAAGGGAATACGAAAACCTCGGTGTTTCTAAGAATACTTTGATCAATGTGGTTGCTTCCAGCCCCTGCGTTTTGGTTGGGGGTGTTGATTTTGATTTTGTTAAGGTTGTGGAGATGTTGAAAGGTCTTATTGGAAAGGATTGTGATTGGATTGGAGAGCATTTGTTGATTAACAAGGGTTGTTGTAATTGGAGGGTGATGCTTCGGATTTTGAGTTTGCTTTCTAGGGTTTACAATGAGAAACAATTGGGTGATTTAATCACTCGTCAACCTGGTTTGATTTTTGAGGAGTCTGGAGGTTGTGTGTTATCCTTGATTGACTTTTTGTTGAAATTTGGATTGTCTGTTAACCGGGTTTGTGTCATGCTGCACGAATTTCCGGAGATTCGGGTTGTGAAATTTTTGTCCAATTTGAGGCAGTGTTTTCTGTTCTTGACTGAGATTGAGATGGAGGCTTCGGAGATTGGGAGGATTTTGCAGTCTCACTGCTTGGTGTTGGGTTCCTTCACCATGAAGAGAACGATTACTTTGTTAACTAACTTGAATGTTGGCAAGAAGCGACTGTGCAGAGTTGTGAGGGATGATCCTCTAATAATGAAGACTTGGGCTTTGGGAAGGAGGATTGAGCCTCTGGTGAACTCGTATTGGGAGTATGAATCGAAGGCGCTGAAGAAGGAGTTCATGTTGAGGTTGGGGTATGAGGAGAACTCGAAAGCAATGAGTGAGACTATGAAGTTGTTAAGGGGTAAGGGAGCTGAGCTTCAGGAGAGACTTGAATTTATTGTCAATGCTGGGTTGGATTATGAGGTTGTCTGTAAGATGATTCGAGAGTCCCCGCGGATTCTTAGTCAGACCACCGATAAGATGAACTTGAAAATTGAGTCTCTTGTGAATGAAGGATATTCGATATCGGATTTGGCAAGTTTTCCTTCCTTCCTTTCCTATTCGGCTCGAAGGGTTAAGCTGAGGTTTTCAATGTATAATTGGCTAAAAAAACATGGAGCTGCAGAAGCAGGATTTGCTTTGAGCACTATAATTGCATGCTCTGAGAAAGCGTTTGAGAAGCTGTACGTGAAGCGCCATCCGTCTGGCCTTAAAGTTTGGCAGGATTTAAAGGCACAAATTTCTTCTGAGGCTTAG 2169 0.455 MEDLKKRKLDEAGNGDFASKEELRFLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPAHRKLFVRGLAWNTTSETLRAAFEEHGEIEEGAVIYDKVTGKSRGYGFITFKNMESTQQALRASSKLIDGRLAVCNLACEGLSGTSSAPDLSLRKLYIGSLSPEVTSEMLLNYFARHGEIEEGSVAYDRDTNESRTKSANKFVGKTIIKEAQAALLEYLHSTRSLNFLDADNMCRNSPSFLQDLLAKTHSHTPRVDTKRSISRYLRYHPINEFEPFFESAGLSPSEYAPLLPPHMIYLNDDLLLMENHHALCNYGVPRTKMGRVFKLAPQVFRYEPRVLISKLREYENLGVSKNTLINVVASSPCVLVGGVDFDFVKVVEMLKGLIGKDCDWIGEHLLINKGCCNWRVMLRILSLLSRVYNEKQLGDLITRQPGLIFEESGGCVLSLIDFLLKFGLSVNRVCVMLHEFPEIRVVKFLSNLRQCFLFLTEIEMEASEIGRILQSHCLVLGSFTMKRTITLLTNLNVGKKRLCRVVRDDPLIMKTWALGRRIEPLVNSYWEYESKALKKEFMLRLGYEENSKAMSETMKLLRGKGAELQERLEFIVNAGLDYEVVCKMIRESPRILSQTTDKMNLKIESLVNEGYSISDLASFPSFLSYSARRVKLRFSMYNWLKKHGAAEAGFALSTIIACSEKAFEKLYVKRHPSGLKVWQDLKAQISSEA* 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00099 722 Gene3D - 55 142 IPR012677 -
Lapu1g00099 722 Pfam mTERF 422 542 IPR003690 GO:0003690|GO:0006355
Lapu1g00099 722 Pfam mTERF 581 697 IPR003690 GO:0003690|GO:0006355
Lapu1g00099 722 SUPERFAMILY RNA-binding domain, RBD 61 207 IPR035979 GO:0003676
Lapu1g00099 722 Gene3D - 153 198 IPR012677 -
Lapu1g00099 722 Gene3D Transcription termination factor 3, mitochondrial 445 714 IPR038538 -
Lapu1g00099 722 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 233 IPR000504 GO:0003723
Lapu1g00099 722 PANTHER GEO13361P1-RELATED 151 196 - -
Lapu1g00099 722 SMART rrm1_1 156 229 IPR000504 GO:0003723
Lapu1g00099 722 SMART rrm1_1 65 137 IPR000504 GO:0003723
Lapu1g00099 722 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 66 132 IPR000504 GO:0003723
Lapu1g00099 722 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 141 IPR000504 GO:0003723
Lapu1g00099 722 SMART mt_12 323 353 IPR003690 GO:0003690|GO:0006355
Lapu1g00099 722 SMART mt_12 646 679 IPR003690 GO:0003690|GO:0006355
Lapu1g00099 722 SMART mt_12 358 390 IPR003690 GO:0003690|GO:0006355
Lapu1g00099 722 SMART mt_12 427 458 IPR003690 GO:0003690|GO:0006355
Lapu1g00099 722 SMART mt_12 463 494 IPR003690 GO:0003690|GO:0006355
Lapu1g00099 722 SMART mt_12 615 645 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00099 Lapu-Chr1 5789315 5797961 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00099 14 153 C2H2 Transcription Factor Family AT2G19380 38.298 4.02e-24 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lapu1g00099 mTERF 3.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00099 - - gmx:100807690 813.527