Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00098 ATGAACGAGAACAAGGTTCATTGGGGAGGATTGATTCAACAAAGTCATGGACTAAGTGGGGATTTTAATTCTGAGTTTGGCAATCATTACTGTCAATATTTTGATATCAGACAGGCCTGGAATATGGGACCACTTGCGATGGTTGGAGGAGAAGCTACGGATCAGTTGCCAAACATAGGCCATGTCAAATCATCTGGCACCATTATCAGCCGTTTTGAGTCACCAGCTTCTGCCTTTTATGCTGCAGAAAACTGCATGGGGTTTGCAGAATATGGCCAAGTTGGTATTCAATCTCAGTTATGTAAGACTAATGACTTGGATTTCCCTTTGTATCAATCTCCCAGGGAAAACCTTTTCTTGGATTCAGCAAACCAACCTGACTCCAACTATGACTTGTCAAACACTTTGCAATCCATAGTGAAATCTCAATTGAATAATAATCAATGTCGTGGATCCCCTGAAAAGTCCAATAAAATTTCATGTGGGAATTTTCCCACCACCAAGTTCCTTCCAATTGAACAGCAGAAGTTGTTCATTGATGGTGTTATCAGGGGCTCGTCATTTCCTAACAAAGGAAGTCAGGACCGTATGGTTGCTCGTGGATCTTTTAATTTACCTGTTGCACATCTGAGATTTTCTTCTCAGATTGAGAAGTTGTCTCCAACACTTTCAGCAGGAAGTGTGTCTACTATTGGAAACTCCGGTTCTAATGGGGCAGTAGTCTCAAGTAAAACACGTATAAGATGGACTAAGGATCTTCATGAGAAATTTGTTGAGTGTGTGAATCGGCTTGGAGGCTCTGAGCAGGCAACACCAAAAGCTATATTAAAGATGATGGACACAGATGGTTTGACTATCTTCCATGTCAAAAGTCATCTGCAGAAGTATAGAATTGCAAAATTCATTCCAGAGCCCAGTCAAGGGAAATCTGACAAAAGAACCTATATAAAGAATGTGCATCATCTTGATGTAAAAACTGGCTTACAAATTAGAGAGGCACTTAAGCTTCAATTAGATGCTCAAAGGTGTCTTCACGAACAACTAGAGGTTCTCATGTATCAGTATAGTTCCCAAATGTACGGAACTGAATGGGAATCCTACATGGGGATTAGCAACCTGGCCAAGATTGTTGGATCAGAACAAGTGAGTGTTCTTGAGCCAAAAAATTCACCCTTCAACATTGTCACCACTCCTCTTCAAATTCAAACCCCACAAGGTTTTTCTGTGAGTGCAACAAAAGGCCATGTGAGTTTTCAAGCTCAACAACATGCTCATCATCAGCATCAGATTGAAGTTCCTGCTTGGTGCTTTGACTTTCCAAAGACGATAGCAACTGACTCTCACATGCTGAATATTCGCCAAGCTTCTGGGGATAACTTCACCACCAAACAAGATCCACCTTCCTCTCAATTCACAAGCTCCTTGTGCCCGGTTGCTGAATCTTTCTTGTCGTCCAGCAATGGTGCTGATTGTCCTTCTTCTGAAAAATATTGTAAAATTAATTCCTATTCTGAAAAATATAGTAGTATGCAGCCTGATAGTAAGCCATATTACGATCACTTTTCACAAGAAGAAGATAAATTACTGAAAGATGATGCTGCCACGGATGAAAGGCCCCTTGAAATTTCCTTTCAGAGAAACCAGTTGGATTCGTGTACAAAGCCACAAAAGCAAGCTCCTCATCGACTTTGTGGAGTTGCCTGTATAACTTCTAGCAACTCTGCTTCTAGGAGAGGCAAAAGAAGAATAAAATGGACCAAAGATCTACACGAGCCATTTATGATGATTGTTAATAGTCTTGGTGGTCCAGAAAAGGCAAAACCTAAGGCTATACTAGATATGATGAAATCAGATTTGCTGTCCATTTCTCATGTTAAAAGCCATTTACAGAAATGTAGGTCTACATTACACATGCACAAAGCTTTGCAGGGTAAATTACTTTTGTCGTTGTCAAATGTGTTATATTACTGCAATGAATATACCTTATGA 1989 0.4022 MNENKVHWGGLIQQSHGLSGDFNSEFGNHYCQYFDIRQAWNMGPLAMVGGEATDQLPNIGHVKSSGTIISRFESPASAFYAAENCMGFAEYGQVGIQSQLCKTNDLDFPLYQSPRENLFLDSANQPDSNYDLSNTLQSIVKSQLNNNQCRGSPEKSNKISCGNFPTTKFLPIEQQKLFIDGVIRGSSFPNKGSQDRMVARGSFNLPVAHLRFSSQIEKLSPTLSAGSVSTIGNSGSNGAVVSSKTRIRWTKDLHEKFVECVNRLGGSEQATPKAILKMMDTDGLTIFHVKSHLQKYRIAKFIPEPSQGKSDKRTYIKNVHHLDVKTGLQIREALKLQLDAQRCLHEQLEVLMYQYSSQMYGTEWESYMGISNLAKIVGSEQVSVLEPKNSPFNIVTTPLQIQTPQGFSVSATKGHVSFQAQQHAHHQHQIEVPAWCFDFPKTIATDSHMLNIRQASGDNFTTKQDPPSSQFTSSLCPVAESFLSSSNGADCPSSEKYCKINSYSEKYSSMQPDSKPYYDHFSQEEDKLLKDDAATDERPLEISFQRNQLDSCTKPQKQAPHRLCGVACITSSNSASRRGKRRIKWTKDLHEPFMMIVNSLGGPEKAKPKAILDMMKSDLLSISHVKSHLQKCRSTLHMHKALQGKLLLSLSNVLYYCNEYTL* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00098 662 SUPERFAMILY Homeodomain-like 579 635 IPR009057 -
Lapu1g00098 662 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 243 301 IPR017930 -
Lapu1g00098 662 FunFam Myb family transcription factor 243 301 - -
Lapu1g00098 662 Pfam MYB-CC type transfactor, LHEQLE motif 328 350 IPR025756 -
Lapu1g00098 662 NCBIfam myb-like DNA-binding domain, SHAQKYF class 244 299 IPR006447 GO:0003677
Lapu1g00098 662 NCBIfam myb-like DNA-binding domain, SHAQKYF class 580 634 IPR006447 GO:0003677
Lapu1g00098 662 Gene3D - 579 636 - -
Lapu1g00098 662 Gene3D - 243 302 - -
Lapu1g00098 662 Pfam Myb-like DNA-binding domain 248 297 IPR001005 -
Lapu1g00098 662 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 234 353 IPR046955 GO:0003700
Lapu1g00098 662 SUPERFAMILY Homeodomain-like 242 298 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00098 Lapu-Chr1 5735983 5780493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00098 570 634 G2-like Transcription Factor Family AT4G28610 58.462 1.88e-16 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lapu1g00098 Myb_DNA-binding 3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00098 - - gmx:100527766 591.652