Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00092 ATGGATACTCGCAAGAGGGGAAGGCTCGAACTCGGTTTCAACTCCAATGGTGGATTTAAGAAATCCAAACAAGAAATGGAGTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCTTGTACCAAGTTTTTCAGCACTTCTGGTTGTCCATTTGGTGAGGGCTGCCACTTCCTGCATTACGTTCCTGGTGGCTATAATGCTGTTGCCCATATAATGAATCTAACACCTGCAGCACCTCCAGCATCAAGAAATGCTGCTGCTCTGCCACCTGTACCAAATGGGTCGGCACCACCTGCTGTTAAGACTCGAATATGCAACAAATTTAATACTGCTGAAGGTTGCAAATTTGGTGACAAATGCCATTTTGCTCATGGTGAATGGGAACTTGGCAAGCATATTGCTCCATCATTTGATGATCATCGTGCCATGGGACCCACTGCAGCAGGTCGTTTTGCTGGTCGAATGGAGCCTTCTCCTGGTCCTGCCACAAGTTTTGGTTCTCAAGCCACGGCCAAGATCAGCGTAGAAGCATCCCTGGCTGGTGCAATCATTGGGAAGGGTGGTGTGAACTCAAAACAGATATGCCGCCAAACTGGAGCTAAACTTTCGATACGGGAGCATGAATCTGATCCTAATATTAGAAACATTGAACTAGAGGGAAATTTTGAGCAAATCAAGGAAGCTAGTAATATGGTGAAGGATTTGCTACTGACCCTGCAAATGTCTGCCACATCAAAAGCTAACCCAGGAGTTCCTGGTGCACCTATTCGAGAGCATGGAAGCAATTTTAAGACGAAGCTGTGTGAGAATTTTTCCAAAGGATCTTGCACATTTGGAGAGAGATGCCACTTTGCTCATGGAGCTGCTGAATTGCGTAAATCAGTATGA 888 0.4572 MDTRKRGRLELGFNSNGGFKKSKQEMESLSTGVGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGYNAVAHIMNLTPAAPPASRNAAALPPVPNGSAPPAVKTRICNKFNTAEGCKFGDKCHFAHGEWELGKHIAPSFDDHRAMGPTAAGRFAGRMEPSPGPATSFGSQATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNIRNIELEGNFEQIKEASNMVKDLLLTLQMSATSKANPGVPGAPIREHGSNFKTKLCENFSKGSCTFGERCHFAHGAAELRKSV* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00092 295 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Lapu1g00092 295 ProSiteProfiles Zinc finger C3H1-type profile. 262 289 IPR000571 GO:0046872
Lapu1g00092 295 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 101 126 IPR000571 GO:0046872
Lapu1g00092 295 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 263 287 IPR000571 GO:0046872
Lapu1g00092 295 ProSiteProfiles Type-1 KH domain profile. 168 232 - -
Lapu1g00092 295 FunFam Zinc finger CCCH domain-containing protein 258 293 - -
Lapu1g00092 295 Gene3D K Homology domain, type 1 163 260 IPR036612 GO:0003723
Lapu1g00092 295 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Lapu1g00092 295 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Lapu1g00092 295 PANTHER CCCH ZINC FINGER/TIS11-RELATED 22 144 IPR045877 GO:0003729
Lapu1g00092 295 FunFam Zinc finger CCCH domain-containing protein 94 131 - -
Lapu1g00092 295 SUPERFAMILY CCCH zinc finger 261 292 IPR036855 GO:0046872
Lapu1g00092 295 Gene3D - 261 294 - -
Lapu1g00092 295 Gene3D - 94 131 - -
Lapu1g00092 295 MobiDBLite consensus disorder prediction 1 26 - -
Lapu1g00092 295 Pfam KH domain 171 233 IPR004088 GO:0003723
Lapu1g00092 295 SMART kh_6 167 237 IPR004087 GO:0003676
Lapu1g00092 295 SUPERFAMILY CCCH zinc finger 98 130 IPR036855 GO:0046872
Lapu1g00092 295 CDD KH-I_AtC3H36_like 171 236 - -
Lapu1g00092 295 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Lapu1g00092 295 SMART c3hfinal6 262 288 IPR000571 GO:0046872
Lapu1g00092 295 SMART c3hfinal6 99 126 IPR000571 GO:0046872
Lapu1g00092 295 ProSiteProfiles Zinc finger C3H1-type profile. 99 127 IPR000571 GO:0046872
Lapu1g00092 295 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 158 240 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00092 Lapu-Chr1 5616616 5620065 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lapu1g00092 KH_1 1.2e-11 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00092 - - gmx:100803981 548.895