Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00088 ATGGGAATGGAGCGAGTGCAGTCTACCTATGGCTCTCTGGACGAAACGTTCGAAATTAGGAAAGAGATGTATCACGGTCAACAATACAGCCATATTTACTTCGCTCGCCTTCATTTGATGCGAACTCTCTTGTATTCCCTCGTTCCTCATTGGAAGCCTAATTATCCCGTGTGCACGGTGCTGGAATTGGAAGAGGCCAAGGAATGTGTCATTGTTGGAACCCTCTACAAACACATGAAGCTCAAACCTTGCATACTTGATGAGTATTCTAAGCAGAAATCAGTGGTTCCACTTGTCAAGCCGCATAACTTCATGCACTCAGATGATTACCTAGTTTTGGAAGATGAAAGTGGGCGGGTTAAGCTCAGTGGAAATGTCATTCTGCCGTCTGAATATTCTGCAACAGGAATTGTGGTTGCTTTACTTGGAAAGGAGAGGGGGGCAGGGGACTTTTTGGTTCAGGATGTACTAGATGCTGGCTTACCGCCACAGATAGAATTTCCCCTTAAATCAGGGGAAGACAAATATGTTGTTCTTGTGTCAGGGTTAAGAGTTGGGAGCAGCAGCTCTAATCCTCTTCAGTTTCAGCTTCTCATTGATCATATTACTGGGCATTTGGGAGATGAGAAGGAGCAAAGTATTGCATCACAAATTGTTCGAGTTATCTTTGCTGGAAATTTAGTTGAGATACCTCAGAGACTTCTTAACGGGCAGAATTTGGCGTCAAAGGATCTTTCAAGAATGTCTGAGCCAGTAAGGGAGCTAGACATTCTATTGAGTCAGATAGCTGCTGGTTTGCCTTTGGATATCATGCCTGGACCCAGTGACCCTGCTAATTTCTCATTGCCACAACAGTCATTGCATCGATGTCTTTTCCCTGGGTCGTCGGTGTATAATACTTTTAGATCTTGTACAAATCCTCATTGTTTTGAGCTTGATAATGTCAGGTTTCTTGGGACATCGGGTCAAAATGTAGATGATCTTGAGAAATATTCTGATGCAAAAGACAAACTTGAATTCATGGAAAGGACATTAAGATGGAGGCATTTAGCACCCACTGCACCTAATACTCTTGGGTGCTTTCCTTATACTGAGAGGGACCCTTTCTTCATTGAGAGCTGTCCTCACGTATACTTTGTTGGAAATCAAGATAAATTTGAAACTCGTGTCATAAAGGGATCGGCAGGGCAGTTGGTGAGACTCATATGTGTTCCTAAATTCAGTGAAACTGGAGTTGCTGTTATGGTGAGCTCCAAATCTTGCACACTTCATTTGAACTTAAATATGGCCTTTTTATACCTCTAA 1305 0.4276 MGMERVQSTYGSLDETFEIRKEMYHGQQYSHIYFARLHLMRTLLYSLVPHWKPNYPVCTVLELEEAKECVIVGTLYKHMKLKPCILDEYSKQKSVVPLVKPHNFMHSDDYLVLEDESGRVKLSGNVILPSEYSATGIVVALLGKERGAGDFLVQDVLDAGLPPQIEFPLKSGEDKYVVLVSGLRVGSSSSNPLQFQLLIDHITGHLGDEKEQSIASQIVRVIFAGNLVEIPQRLLNGQNLASKDLSRMSEPVRELDILLSQIAAGLPLDIMPGPSDPANFSLPQQSLHRCLFPGSSVYNTFRSCTNPHCFELDNVRFLGTSGQNVDDLEKYSDAKDKLEFMERTLRWRHLAPTAPNTLGCFPYTERDPFFIESCPHVYFVGNQDKFETRVIKGSAGQLVRLICVPKFSETGVAVMVSSKSCTLHLNLNMAFLYL* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00088 434 FunFam DNA polymerase delta small subunit 162 430 - -
Lapu1g00088 434 Pfam DNA polymerase alpha/epsilon subunit B 177 387 IPR007185 GO:0003677|GO:0006260
Lapu1g00088 434 Gene3D - 35 159 - -
Lapu1g00088 434 Pfam DNA polymerase delta subunit OB-fold domain 28 156 IPR040663 -
Lapu1g00088 434 Gene3D - 168 428 - -
Lapu1g00088 434 FunFam DNA polymerase delta subunit 2 34 159 - -
Lapu1g00088 434 CDD MPP_PolD2_C 176 424 IPR041863 -
Lapu1g00088 434 PANTHER DNA POLYMERASE DELTA SUBUNIT 2 5 424 IPR024826 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00088 4 424 Core DNA Replication Machinery Family AT2G42120 73.159 0.0 664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00088 K02328 - gmx:100780072 770
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00088 1 5539633 5547263 Lapu1g00088 1 5539633 5547263 ECH