Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00087 ATGTGGATGATTTCGTGGCTTGCAAGTATAGCTTCTTCGTGTTTGAGGCCTGTGAGGCACTATGCCCGCATAATCAGTGATGATGATGATGAGTCTTCTTCATCCATTGGAAACTCACTTCTGTGGCGTAGAGACCTTCAGAGACATTCTTGTGGTGAATTCTCCTTTGCTGTGTGTCAGGCCAATCGACAAATTGAGGATCATAGCCAAGTTGAGATCGGCTCTAATGCCATCTTTGTCGGAGTGTATGACGGTCATGGTGGTCCTGAAGCTTCCCGGTTCGTTAGACAACGCCTCTTCCAGAACTTAATAAGGATTACACAGGAGAACAGAACTATCTCTGAAGCAACTCTCAAGAAAGCTATCTCTGATACAGAGAGTGATTTTTTGACTGTTGTTGAAAGGAGTTATACGATGGAGGCTTCAATGGCACAAGTTGGTACCTGTTGTCTGATTGGTGTTATCTGGAAAGGGATTCTATATATCGCCAATGTTGGAGACTCCCGTGCCATACTTGGTTCTGTAGGTAGATGTAACAGCATCATTGCTGAACAGTTGACTAGAGATCACAATGCCAATAGGCAGGATGTTAGAGAAGAACTTAGGGCTTTGCATCCACATGATCCAAATATTGTAGTCATGAATCGTGGAACATGGCGTGTTAAAGGCGTCATCCAGGTATCCAGAACCATAGGAGATGCATATCTGAAGAGGCCACCATTCTCTCTGGATCCATCGTTCCCTCAGCTCTTGAGTGAACCAATCACTGAACCTGTGCTCACTGCAGATCCATCTCTATCTTCAATAGTTTTGCAACCCCATATCAAATTTCTTATATTTGCATCCGATGGACTTTGGGAACATTTGACAAATCAGCAAGCAGCTGAGATTGTTCATTGTAATCCACGAAATGGGATTGCTAGAAAACTTATTAAGGCTGCTCTAAAGGAGGCAGCTAGAAAATCGAGGATGGAATACCGACAGCTTCAGAGCCTTGTGAGAGGGAACAGAAGGGCTTTTCATGATGACATTACTGTGATTGTTGTCTTCATAGACGAAGACTCAGCTGTTAATGTGCCAGAGCTGTCCATAGTAGGGTTCATTGATTCAGCTGGACCATCAAATTTTCGAAATGTGCACGAGTTAATGTGA 1152 0.4366 MWMISWLASIASSCLRPVRHYARIISDDDDESSSSIGNSLLWRRDLQRHSCGEFSFAVCQANRQIEDHSQVEIGSNAIFVGVYDGHGGPEASRFVRQRLFQNLIRITQENRTISEATLKKAISDTESDFLTVVERSYTMEASMAQVGTCCLIGVIWKGILYIANVGDSRAILGSVGRCNSIIAEQLTRDHNANRQDVREELRALHPHDPNIVVMNRGTWRVKGVIQVSRTIGDAYLKRPPFSLDPSFPQLLSEPITEPVLTADPSLSSIVLQPHIKFLIFASDGLWEHLTNQQAAEIVHCNPRNGIARKLIKAALKEAARKSRMEYRQLQSLVRGNRRAFHDDITVIVVFIDEDSAVNVPELSIVGFIDSAGPSNFRNVHELM* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00087 383 CDD PP2Cc 54 351 IPR001932 -
Lapu1g00087 383 Coils Coil 312 332 - -
Lapu1g00087 383 FunFam Probable protein phosphatase 2C 42 44 358 - -
Lapu1g00087 383 Gene3D - 31 358 IPR036457 -
Lapu1g00087 383 SMART PP2C_4 47 349 IPR001932 -
Lapu1g00087 383 PANTHER PROTEIN PHOSPHATASE 41 349 IPR015655 GO:0004722|GO:0006470
Lapu1g00087 383 ProSitePatterns PPM-type phosphatase domain signature. 79 87 IPR000222 GO:0043169
Lapu1g00087 383 SUPERFAMILY PP2C-like 59 352 IPR036457 -
Lapu1g00087 383 Pfam Protein phosphatase 2C 75 320 IPR001932 -
Lapu1g00087 383 ProSiteProfiles PPM-type phosphatase domain profile. 50 351 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00087 Lapu-Chr1 5527525 5530095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00087 3 376 PP2C-type Phosphatase Gene Family AT5G06750 58.505 1.26e-154 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00087 K01102 - gmx:100806476 540.806