Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00070 ATGAGCAACACCTCCACCCACGACTTCATGAACGTCGACTCTTTCTCTCAGCTCCCCTTTCTCCGCCCCTCGCCCCCTTCCAAAGATAAGCCCATTCGCCTCTTCGGCCAAGACTTCCCCCACCACCCCCAAACCACCCCCACACTTCCCGACTACCCTTCCCAACATAATACCGAAAACCACCGCGCTGACCACAACACCACCAGCGCACAAAACGCCCAGCCCTCCCGCAGATTCGAGTGCCATTACTGCTGCAGAAACTTCCCCACTTCCCAGGCCTTAGGCGGCCACCAAAACGCCCACAAACGAGAGCGCCAACACGCCAAACGACACCTCCACTCATCCATGCTCCAAACCGCCCTCTCCGATCCCACCACCTACCCTTTCATCAACCCCACCTTCGCTTCCTCCGCAATCTCTTATTCTTCTTACCCTACTTGGGATTCTAACAATGCTCGCCGAACGTTCTACGGAACCTCCTATTCTCACCAACTTCAACCCATCAACGGAAGCCCCTTGGGCCTATGGCGAATCCCCAACGCCACTGCAACCACTCACGCCCAGAGTAACCCTATTTTATACCACCAACGCACGTCGCCTTTGCTTGCTGGCCAGGAAATGGTGAGCACCAGGATGGGTTCCTCTCCCTCTGCATCGCAGAACCGGTCTGGTTATGACCTAAAACCCAGCGTAAACGACCATGTGAGTTTGGATCTTCATCTGTAA 726 0.5537 MSNTSTHDFMNVDSFSQLPFLRPSPPSKDKPIRLFGQDFPHHPQTTPTLPDYPSQHNTENHRADHNTTSAQNAQPSRRFECHYCCRNFPTSQALGGHQNAHKRERQHAKRHLHSSMLQTALSDPTTYPFINPTFASSAISYSSYPTWDSNNARRTFYGTSYSHQLQPINGSPLGLWRIPNATATTHAQSNPILYHQRTSPLLAGQEMVSTRMGSSPSASQNRSGYDLKPSVNDHVSLDLHL* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00070 241 MobiDBLite consensus disorder prediction 41 56 - -
Lapu1g00070 241 MobiDBLite consensus disorder prediction 208 229 - -
Lapu1g00070 241 MobiDBLite consensus disorder prediction 208 227 - -
Lapu1g00070 241 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Lapu1g00070 241 MobiDBLite consensus disorder prediction 16 73 - -
Lapu1g00070 241 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 106 IPR013087 -
Lapu1g00070 241 SUPERFAMILY beta-beta-alpha zinc fingers 76 107 IPR036236 -
Lapu1g00070 241 PANTHER ZINC FINGER PROTEIN GIS 3 241 IPR044291 GO:0003700|GO:0009739|GO:0010026|GO:0010090
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00070 Lapu-Chr1 4834755 4835592 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00070 4 241 C2H2 Transcription Factor Family AT3G58070 42.857 2.72e-47 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00070 - - pvu:PHAVU_001G144900g 409.453