LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu1g00056	ATGAGGATCCGGAAAAGGCCGGTGCTTTTCCCGTCGTCGGTCTCGCCGTTGCCTCTGTCAGATCCACTCCTGATCAGCAGGTCGCCGGTGGTGGTGCAACTAAGCGAGGCTACTTCCACGGCAGCGAAACATTCTTCTTCTCCTCCTTCTGCTGTGCTCCTCCGTCATGCTGCTTCGACGAGCTTGGATCGTTGGCAGCCATCTGATCAGTCTCTTCCTTCGATCGGGAAGCCAAGCAACGGCTGGGATGATCCCTCCGGCATGGGTGAAAGTGGGTCACACAGACAGCACAACAAGCAAGACCCTTTGAAAGGGGCATGTTTGGGACAAGAACAAGATCCTGTGTATATTTTGATTTTGTTGGTTTTGCAGGACGAGGTTGTTAGAAGGGAAGAAAGTGGAGAAGACTCCGGAGAGAAGGGTAATCATACCAGGAAAGGACGCAACTTGAGTTTGGAAACACAAGCTGGGGTGTTGTCACCCTTGAGCCCTTCTTCCACTCAAGATGGGAGATGGTACGAGGGAGAGAAAGCTATTCCGCTGAAGAAAAGGAGAGGGTCATTGGAGGAGAATAATATTGTTGCAACTCATAGCAAGAAGATGAAGGCAAAGATGAAGACCAAGATGAACAAGAAATGTTCCTCGCATAACGAGTATAGCACGGAAGAGGAAGGTGAAGAACAAGAGAAGGGAGAAGAAACAAAACTGGATGTGAACGTGAACGTGAATGTGAATAAGAAGAGGGTAAGGGGTAGTGCACTGATGGAAGGTTCTAGGTGCAGTCGTGTGAATGGGAGGGGATGGAGGTGTTGTCAGCAAACGCTGGTTGGTTACTCGCTGTGCGAGCATCACTTGGGGAAGGGAAGACTGAGAAGCATGACAAGTGTTAGAAGCCGGTCCATCGCATCTACTGCACCAAAGAAGGTGCACATGCACCACCCTTCTTCTTCTTATTCTTCTCTTGAGAAGCAAAATATGAGTGTTGCTGAGTCCTTGGGGGAGGAGGAAAAGAAGCCAGAGATAATAACGAAGAAGAGGATGAAGCTTGGCGTGGTGAAAGCGCGTTCCATAAGCAGCTTGCTTGGACAAACAAACACCCAGATAGCTGCTGTAGCTCATGAGAATAGCAAGTAA	1134	0.4929	MRIRKRPVLFPSSVSPLPLSDPLLISRSPVVVQLSEATSTAAKHSSSPPSAVLLRHAASTSLDRWQPSDQSLPSIGKPSNGWDDPSGMGESGSHRQHNKQDPLKGACLGQEQDPVYILILLVLQDEVVRREESGEDSGEKGNHTRKGRNLSLETQAGVLSPLSPSSTQDGRWYEGEKAIPLKKRRGSLEENNIVATHSKKMKAKMKTKMNKKCSSHNEYSTEEEGEEQEKGEETKLDVNVNVNVNKKRVRGSALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMTSVRSRSIASTAPKKVHMHHPSSSYSSLEKQNMSVAESLGEEEKKPEIITKKRMKLGVVKARSISSLLGQTNTQIAAVAHENSK*	378

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lapu1g00056	377	MobiDBLite	consensus disorder prediction	313	327	-	-
Lapu1g00056	377	Pfam	WRC	256	296	IPR014977	-
Lapu1g00056	377	MobiDBLite	consensus disorder prediction	302	336	-	-
Lapu1g00056	377	MobiDBLite	consensus disorder prediction	199	233	-	-
Lapu1g00056	377	MobiDBLite	consensus disorder prediction	62	106	-	-
Lapu1g00056	377	MobiDBLite	consensus disorder prediction	131	171	-	-
Lapu1g00056	377	ProSiteProfiles	WRC domain profile.	254	298	IPR014977	-
Lapu1g00056	377	MobiDBLite	consensus disorder prediction	148	170	-	-
Lapu1g00056	377	MobiDBLite	consensus disorder prediction	62	77	-	-
Lapu1g00056	377	PANTHER	EXPRESSED PROTEIN-RELATED	61	361	-	-

Showing 1 to 10 of 11 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu1g00056	Lapu-Chr1	4293173	4295758	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu1g00056	245	292	GRF Transcription Factor Family	AT5G53660	39.583	7.04e-06	45.8

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu1g00056	-		-	gmx:100810559	457.603

Showing 1 to 1 of 1 entries

Previous1Next

Event-related genes

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lapu1g00056	1	4293173	4295758	Lapu1g00056	1	4293173	4295758	ECH
	Lapu1g00056	1	4293173	4295758	Lapu7g00191	7	2109461	2111750	PCT

Showing 1 to 2 of 2 entries

Previous1Next