Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00056 ATGAGGATCCGGAAAAGGCCGGTGCTTTTCCCGTCGTCGGTCTCGCCGTTGCCTCTGTCAGATCCACTCCTGATCAGCAGGTCGCCGGTGGTGGTGCAACTAAGCGAGGCTACTTCCACGGCAGCGAAACATTCTTCTTCTCCTCCTTCTGCTGTGCTCCTCCGTCATGCTGCTTCGACGAGCTTGGATCGTTGGCAGCCATCTGATCAGTCTCTTCCTTCGATCGGGAAGCCAAGCAACGGCTGGGATGATCCCTCCGGCATGGGTGAAAGTGGGTCACACAGACAGCACAACAAGCAAGACCCTTTGAAAGGGGCATGTTTGGGACAAGAACAAGATCCTGTGTATATTTTGATTTTGTTGGTTTTGCAGGACGAGGTTGTTAGAAGGGAAGAAAGTGGAGAAGACTCCGGAGAGAAGGGTAATCATACCAGGAAAGGACGCAACTTGAGTTTGGAAACACAAGCTGGGGTGTTGTCACCCTTGAGCCCTTCTTCCACTCAAGATGGGAGATGGTACGAGGGAGAGAAAGCTATTCCGCTGAAGAAAAGGAGAGGGTCATTGGAGGAGAATAATATTGTTGCAACTCATAGCAAGAAGATGAAGGCAAAGATGAAGACCAAGATGAACAAGAAATGTTCCTCGCATAACGAGTATAGCACGGAAGAGGAAGGTGAAGAACAAGAGAAGGGAGAAGAAACAAAACTGGATGTGAACGTGAACGTGAATGTGAATAAGAAGAGGGTAAGGGGTAGTGCACTGATGGAAGGTTCTAGGTGCAGTCGTGTGAATGGGAGGGGATGGAGGTGTTGTCAGCAAACGCTGGTTGGTTACTCGCTGTGCGAGCATCACTTGGGGAAGGGAAGACTGAGAAGCATGACAAGTGTTAGAAGCCGGTCCATCGCATCTACTGCACCAAAGAAGGTGCACATGCACCACCCTTCTTCTTCTTATTCTTCTCTTGAGAAGCAAAATATGAGTGTTGCTGAGTCCTTGGGGGAGGAGGAAAAGAAGCCAGAGATAATAACGAAGAAGAGGATGAAGCTTGGCGTGGTGAAAGCGCGTTCCATAAGCAGCTTGCTTGGACAAACAAACACCCAGATAGCTGCTGTAGCTCATGAGAATAGCAAGTAA 1134 0.4929 MRIRKRPVLFPSSVSPLPLSDPLLISRSPVVVQLSEATSTAAKHSSSPPSAVLLRHAASTSLDRWQPSDQSLPSIGKPSNGWDDPSGMGESGSHRQHNKQDPLKGACLGQEQDPVYILILLVLQDEVVRREESGEDSGEKGNHTRKGRNLSLETQAGVLSPLSPSSTQDGRWYEGEKAIPLKKRRGSLEENNIVATHSKKMKAKMKTKMNKKCSSHNEYSTEEEGEEQEKGEETKLDVNVNVNVNKKRVRGSALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMTSVRSRSIASTAPKKVHMHHPSSSYSSLEKQNMSVAESLGEEEKKPEIITKKRMKLGVVKARSISSLLGQTNTQIAAVAHENSK* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00056 377 MobiDBLite consensus disorder prediction 313 327 - -
Lapu1g00056 377 Pfam WRC 256 296 IPR014977 -
Lapu1g00056 377 MobiDBLite consensus disorder prediction 302 336 - -
Lapu1g00056 377 MobiDBLite consensus disorder prediction 199 233 - -
Lapu1g00056 377 MobiDBLite consensus disorder prediction 62 106 - -
Lapu1g00056 377 MobiDBLite consensus disorder prediction 131 171 - -
Lapu1g00056 377 ProSiteProfiles WRC domain profile. 254 298 IPR014977 -
Lapu1g00056 377 MobiDBLite consensus disorder prediction 148 170 - -
Lapu1g00056 377 MobiDBLite consensus disorder prediction 62 77 - -
Lapu1g00056 377 PANTHER EXPRESSED PROTEIN-RELATED 61 361 - -
Lapu1g00056 377 MobiDBLite consensus disorder prediction 131 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00056 Lapu-Chr1 4293173 4295758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00056 245 292 GRF Transcription Factor Family AT5G53660 39.583 7.04e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00056 - - gmx:100810559 457.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00056 1 4293173 4295758 Lapu1g00056 1 4293173 4295758 ECH
Lapu1g00056 1 4293173 4295758 Lapu7g00191 7 2109461 2111750 PCT