Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00054 ATGGAGGAAGAGACCACCGATGCAATGAACCTTGATTTGAATCTGGGTCCAGGCCCAGAGCCTGAAACTGGTCCCATTAGCAATGAAGCTGTGAACTTGGACGATTGGATAGGAGAGCCTCTTCCGAGAATTAGCGAAACTGTGAGGTTTAGGGCCCGGCAACGGTGGCGATGGCGGCATCTTCCGCTACCGCATCCTGAACTTCATGTTCACATCCCACCTGAAGCTGCACGACATTTTCATATACCTCCTGAGGCTCACAATATCTCCATGGAATTGAACCAGTTTCTGGTCAATTCGGGAAATGGAACTGCCTTACAGGCTGGGGAAGGCAGCGTGGCGGCCGAGGAGAGAATGGAGGAGGCGCCGAAGGCGTGTGAGAATGTCAATGGTGTTGCAGAGGACGAGGCTTCACAGAAGAAGGATGATGTTGAAAAGGGTAGTGGCACTGATGGGGACTTTTTTGACTGTAACATCTGTTTGGACCTCTCTAGGGATCCTGTTGTGACTTGTTGTGGCCATTTGTTTTGCTGGCCTTGCCTGTATAGGTGGTTGCATCTGCATTCGGATGCGAAAGAGTGTCCAGTTTGTAAGGGAGAGGTGACTCTTAAAAGTGTTACCCCAATATATGGCCGTGGGATCAATGTCCGAGGTCACGAGGAGGATTCTGCTCTTAAGATCCCTCCCAGGCCACAAGCAAGGAGGGTTGAGAGTCTGAGACAAACCATTCAGAGAAATGCATTTGCACTCCCTGTGGAAGAGATGATTCGGCGTCTCGGGAGTAGAATTGATCTTACTCGTGATTTTGTTCAGCCACATGAAGTGGATGGTGCCCGTGAAACTGCAGAGAGAACTACTTCCTTGCTAAGTAGGTTCTTGACTGCTCGAGGGATGCGGAGAGAGCAGAATTTAGTGGCACCTCCTGAGGATGTAATGGGTTTGGCTCAGAATAATGTTAATCCTGCTGAGGCAGGGGATAACCGAAGTAGGGTGCAATCCCATTTGCTTCGAAGAACACAATCACACAGAGCAACACTTTCTACTCTTTCATCAGCTCTGACTTCTGCTGAAAGGTTAGTTGAGGCTTATTTCCGTAGCAATCCAATAGGTAGGAACCAAGAGCAACCTCCTCCTCCAGTTGATGACAGAGATTCCTTTTCTAGCATTGGTGCTGTTATAAATTCAGAGAGTCAAGTGGACACTGCTGTAGAGATTGATTCCATGGTATCCTTGTCAACATCCTCTTCTAGGAGGAGGAATGATGCTTCAAGATTGTCTGATGTGGACAGTGGAGATTCTCGTGCTCCAAGGCGCAGACGTTTGAACTGA 1329 0.4868 MEEETTDAMNLDLNLGPGPEPETGPISNEAVNLDDWIGEPLPRISETVRFRARQRWRWRHLPLPHPELHVHIPPEAARHFHIPPEAHNISMELNQFLVNSGNGTALQAGEGSVAAEERMEEAPKACENVNGVAEDEASQKKDDVEKGSGTDGDFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHLHSDAKECPVCKGEVTLKSVTPIYGRGINVRGHEEDSALKIPPRPQARRVESLRQTIQRNAFALPVEEMIRRLGSRIDLTRDFVQPHEVDGARETAERTTSLLSRFLTARGMRREQNLVAPPEDVMGLAQNNVNPAEAGDNRSRVQSHLLRRTQSHRATLSTLSSALTSAERLVEAYFRSNPIGRNQEQPPPPVDDRDSFSSIGAVINSESQVDTAVEIDSMVSLSTSSSRRRNDASRLSDVDSGDSRAPRRRRLN* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00054 442 MobiDBLite consensus disorder prediction 420 442 - -
Lapu1g00054 442 ProSitePatterns Zinc finger RING-type signature. 172 181 IPR017907 -
Lapu1g00054 442 ProSiteProfiles Zinc finger RING-type profile. 157 198 IPR001841 -
Lapu1g00054 442 MobiDBLite consensus disorder prediction 366 386 - -
Lapu1g00054 442 MobiDBLite consensus disorder prediction 127 147 - -
Lapu1g00054 442 CDD RING-HC_AtRMA-like 155 198 - -
Lapu1g00054 442 SMART ring_2 157 197 IPR001841 -
Lapu1g00054 442 FunFam E3 ubiquitin-protein ligase RMA3 125 246 - -
Lapu1g00054 442 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 123 318 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lapu1g00054 442 Pfam Zinc finger, C3HC4 type (RING finger) 157 197 - -
Lapu1g00054 442 MobiDBLite consensus disorder prediction 1 23 - -
Lapu1g00054 442 SUPERFAMILY RING/U-box 152 210 - -
Lapu1g00054 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 212 IPR013083 -
Lapu1g00054 442 MobiDBLite consensus disorder prediction 409 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00054 Lapu-Chr1 4269007 4272046 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00054 1 433 C3H Transcription Factor Family AT3G58030 54.967 2.61e-141 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00054 K10666 - gmx:100811099 781.556