Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00051 ATGGAGTTAGCTCTGAGCTTAGGCCACACACCCAAGCCCTTATCTTTTCCCACAAACAATGCTTCACTGGGTTCCTCAGATCCACCCCTTCAGCTCCACCTTCTTCCTTCATCTTCAACATCCCTTCTTCCTTCTCCACGCCTTCCCATTTCATGGCTCTCCCATGCAAGCATGGAGCATGTCACATCGGAGATTCCAATGAGGGCACTGGACGAAACGGATGACGCTGCTGCAGCTTCATCCCCCAACAGTGCAGTCTCGTCTTTTCAGATGGATTTTTGCGGCAGAAACAGTAGAAAGTTTTGTGAGGGTGACAGCGACCAAGACGAGAATGAATCAACAAGGAAGAAACTCAGACTCTCCAAAACACAATCAGCTTTCCTAGAAGATAGCTTCAAAGAACACACTACTCTCAACCCCAAACAAAAACTTGTTCTTGCAAAAGAGTTAAATCTCCGTCCTCGTCAAGTGGAGGTTTGGTTTCAGAATAGAAGGGCAAGAACAAAGTTGAAGCAGACAGAGGTGGACTGTGAGTACTTGAAAAGGTGTTGTGAGAGTCTGACAGAAGAGAATAAGAGGTTACAGAAGGAACTACAAGAACTGAGGGCTTTGAAAACTTGTGAACCGTTTTTCATGCAGCTTCCGGCCACCACTCTCACCATGTGTCCCTCCTGTGAACGCGTCGCCACCAACACCTCTGCGGCGGCAGCAGCAGCCACCAACAATAATAGTGTTCCTCAAATCCCTGCGGCGGACAAGCCCAGAATATTGCCCTGA 777 0.4826 MELALSLGHTPKPLSFPTNNASLGSSDPPLQLHLLPSSSTSLLPSPRLPISWLSHASMEHVTSEIPMRALDETDDAAAASSPNSAVSSFQMDFCGRNSRKFCEGDSDQDENESTRKKLRLSKTQSAFLEDSFKEHTTLNPKQKLVLAKELNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENKRLQKELQELRALKTCEPFFMQLPATTLTMCPSCERVATNTSAAAAAATNNNSVPQIPAADKPRILP* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00051 258 Coils Coil 177 204 - -
Lapu1g00051 258 MobiDBLite consensus disorder prediction 1 29 - -
Lapu1g00051 258 ProSiteProfiles 'Homeobox' domain profile. 111 171 IPR001356 GO:0003677
Lapu1g00051 258 SUPERFAMILY Homeodomain-like 108 172 IPR009057 -
Lapu1g00051 258 ProSitePatterns 'Homeobox' domain signature. 146 169 IPR017970 GO:0000981|GO:0006355
Lapu1g00051 258 Pfam Homeodomain 115 169 IPR001356 GO:0003677
Lapu1g00051 258 MobiDBLite consensus disorder prediction 12 29 - -
Lapu1g00051 258 Pfam Homeobox associated leucine zipper 171 205 IPR003106 GO:0006355|GO:0043565
Lapu1g00051 258 SMART HOX_1 113 175 IPR001356 GO:0003677
Lapu1g00051 258 SMART halz 171 214 IPR003106 GO:0006355|GO:0043565
Lapu1g00051 258 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 17 242 - -
Lapu1g00051 258 FunFam Homeobox-leucine zipper protein HAT22 119 165 - -
Lapu1g00051 258 CDD homeodomain 115 172 IPR001356 GO:0003677
Lapu1g00051 258 Gene3D - 119 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00051 Lapu-Chr1 4229571 4230912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00051 105 256 Homeobox Transcription Factor Family AT4G37790 63.399 2.90e-65 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lapu1g00051 Homeodomain 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00051 K09338 - gmx:100810885 337.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00051 1 4229571 4230912 Lapu1g00051 1 4229571 4230912 ECH
Lapu1g00051 1 4229571 4230912 Lapu7g01232 7 26157125 26161100 PCT