Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00043 ATGTTGTGCTGCGGAGGTGCAGAGGAGGAGAGCAGCGGGCCCCCTGCAAGCCAATACACATCTGCACCACCTAGGGGTAGCACATACGGTGGAGGAGGAGGAAACGATAGAGGAGAGCCTAGGGGTATTGCAAAGAGTGCCCCGCAGAAAGTATTGCCAATTGAGATACCCTCTATTCCATTGGATGAGTTAAATAGGTTAACAGGAAACTTTGGTACAAAGGCTTTCATTGGCGAAGGTTCCTACGGACGGGTTTACTATGCAAAATTGAGTGATGGTACTGATGCTGCAATTAAGAAGCTGGATAACAGTTCTTCCCCAGAACCTGACTCCGATTTCGGGGCTCAGTTATCAGTTGTATCAAGACTGAAGCATGACCACTTTGTGGAGTTGATTGGATACTGTCTAGAGGCAGAAAACAGAATTTTGGTTTATCAACATGCAAGCCTTGGTTCTTTGCATGACGTGTTACATGGAAGGAAGGGTGTACAAGGGGCTGAACCTGGTCCAGTTTTAAGCTGGAACCAGAGAGCCAAAATTGCATTTGGTGCAGCAAAAGGACTCGAGTTTCTTCACGAAAAGGCTCAGCCTTCTATTGTTCATCGCGATGTTAGATCCAGCAATGTTTTACTCTTCAATGACTATGAGGCCAAGATAGCTGATTTTAGCTTGACAAATCAGTCTTCTGACACAGCCGCTCGGCTACATTCAACAAGAGTCTTGGGAACATTTGGCTATCATGCTCCAGAGTATGCCATGACAGGGCAGATAACCCAGAAAAGTGATGTTTACAGTTTTGGTGTTGTGCTATTAGAACTCTTGACTGGAAGAAAGCCAGTAGATCACACAATGCCGAAAGGACAACAAAGTCTTGTAACTTGGGCAACTCCAAGGCTGAGCGAGGACAAAGTGAAACAGTGTGTTGATCCTAAGTTAAACAATGAGTATCCGCCAAAGGCTATTGCTAAATTGGCAGCTGTGGCAGCACTTTGTGTTCAGTATGAAGCTGACTTCAGACCAAACATGACGATTGTTGTCAAAGCTCTCCAGCCACTTCTCAATGCAAAACCGCCTGGTCCTGAAGCTCAAGCTTGA 1095 0.4584 MLCCGGAEEESSGPPASQYTSAPPRGSTYGGGGGNDRGEPRGIAKSAPQKVLPIEIPSIPLDELNRLTGNFGTKAFIGEGSYGRVYYAKLSDGTDAAIKKLDNSSSPEPDSDFGAQLSVVSRLKHDHFVELIGYCLEAENRILVYQHASLGSLHDVLHGRKGVQGAEPGPVLSWNQRAKIAFGAAKGLEFLHEKAQPSIVHRDVRSSNVLLFNDYEAKIADFSLTNQSSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCVDPKLNNEYPPKAIAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNAKPPGPEAQA* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00043 364 SUPERFAMILY Protein kinase-like (PK-like) 48 349 IPR011009 -
Lapu1g00043 364 ProSitePatterns Tyrosine protein kinases specific active-site signature. 199 211 IPR008266 GO:0004672|GO:0006468
Lapu1g00043 364 FunFam PTI1-like tyrosine-protein kinase 3 149 358 - -
Lapu1g00043 364 SMART tyrkin_6 71 349 IPR020635 GO:0004713|GO:0006468
Lapu1g00043 364 Pfam Protein tyrosine and serine/threonine kinase 75 349 IPR001245 GO:0004672|GO:0006468
Lapu1g00043 364 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 2 357 - -
Lapu1g00043 364 Gene3D Transferase(Phosphotransferase) domain 1 149 358 - -
Lapu1g00043 364 FunFam probable protein kinase At2g41970 44 147 - -
Lapu1g00043 364 PIRSF ILK 35 356 - -
Lapu1g00043 364 MobiDBLite consensus disorder prediction 1 47 - -
Lapu1g00043 364 ProSiteProfiles Protein kinase domain profile. 71 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g00043 364 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Lapu1g00043 364 Gene3D Phosphorylase Kinase; domain 1 44 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00043 Lapu-Chr1 4130169 4132890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00043 62 355 Trihelix Transcription Factor Family AT5G38560 44.000 4.14e-84 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Lapu1g00043 PK_Tyr_Ser-Thr 2.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00043 - - gmx:100786291 663.685