Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00025 ATGGTGACTGGTTTTGCCCTTCATGTTGTTGTGCGATTTGCAGCCAAATCAAAACAGAAGGGACTGAGGATGTACTTTTTCTTACTTGCATTCAATGTGAACATAAATATCGAAAAAGATGAGTCAAGAAGATATATGGAAAATTGGTTGTGTGGAAAAGAGTGTGAACAGATATATGCAGGCCTCCAAAGCCTATTAGGAAAGCCACTTACAGTGGGTCCGAACAATCTAACTTCGACCTTGGAGAAGTTTAACGACTCTGAGAGTCCTGATGTTGGCAGTTCTCAGAATTACTTATTAGCAGAGAAATACAACAAACTCAGTGTTGCACTTTCGGTGATGCATGAGTGTTTTGATCCCCTCAAGAACCCTTTGACTGGTAGAGATATCATTGATGATGTTATGTTCAACTCAAGGTCAGAGCTCAATAGATTGAATTTCCAGGATTTCTAG 453 0.3974 MVTGFALHVVVRFAAKSKQKGLRMYFFLLAFNVNINIEKDESRRYMENWLCGKECEQIYAGLQSLLGKPLTVGPNNLTSTLEKFNDSESPDVGSSQNYLLAEKYNKLSVALSVMHECFDPLKNPLTGRDIIDDVMFNSRSELNRLNFQDF* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00025 150 PANTHER PHD FINGER PROTEIN 12 43 150 IPR042163 GO:0003714|GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00025 Lapu-Chr1 2385016 2386865 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00025 47 150 PHD Transcription Factor Family AT5G58610 42.308 6.05e-20 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00025 - - pvu:PHAVU_008G260100g 214.927