Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00010 ATGCCAAGATGTAAGGTCCATTACTGGGCAGAAGGAGGCAGTAACACTGATGTAGCTCAGGGGAGGGTAACTTATGACGGGATTAGGTGTAGCTGCTGCCAGAAAATATATGGTCTTCGGGACTTTGTAAATCATGCTGGAGGAAATGGTGACTGCAGGCCTTCTGCTAGCATATTTTTAAAGGATGGTAGGATATCCCTCATGGTGACTGGTTTTGCCCTTCATGTTGTTGTGCGATTTGCAGCCAAATCAAAACAGAAGGGACTGAGGATGTACTTTTTCTTACTTGCATTCAATGTGAACATAAATATATATGCAGGCCTCCAAAGCCTATTACGAAAGCCACTTACAGTGGGTCCGAACAATCTAACTTGGACCTTGGAGAAGTTTAACAACTCTGAGAGTCCTGATGTTGGCAGTTCTCAGAATTACTTATTGGTAGAGAAATACAGCAAACTCAGTGTTGCACTTTCGGTGATGCATGAGTGTTTTGATCCCCTGAAGAACCCTTTGACTGGTAGAGATATCATTGATGATGTTATGTTCAACTCAAGGTCAGAGCTCAATCGATTGAATTTCCAGGGTTTCTACACTGTACTTCTGGAGCAAAATGAAGAATTGATTAATGTTAAATTGCATATTTTTGAAGGAATGACTGCAGGCCTTCTGCTAGCATATTTTTTAGGAAATGGTGACTGCAGGCCTTCTCCTAGCATATTTTTGAGGATGGTAGGTCACTGTTAG 744 0.418 MPRCKVHYWAEGGSNTDVAQGRVTYDGIRCSCCQKIYGLRDFVNHAGGNGDCRPSASIFLKDGRISLMVTGFALHVVVRFAAKSKQKGLRMYFFLLAFNVNINIYAGLQSLLRKPLTVGPNNLTWTLEKFNNSESPDVGSSQNYLLVEKYSKLSVALSVMHECFDPLKNPLTGRDIIDDVMFNSRSELNRLNFQGFYTVLLEQNEELINVKLHIFEGMTAGLLLAYFLGNGDCRPSPSIFLRMVGHC* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00010 247 PANTHER PHD FINGER PROTEIN 12 2 67 IPR042163 GO:0003714|GO:0045892
Lapu1g00010 247 Pfam Tify domain binding domain 21 64 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00010 Lapu-Chr1 1226095 1228661 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00010 20 64 PHD Transcription Factor Family AT5G58610 44.444 4.81e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00010 - - pvu:PHAVU_008G260100g 199.519