Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00008 ATGCCAAGATGTAAGGTCCATTACTGGACAGAAGGAGGCAGTAACACTGATGTAGCTCAGGGGAGGGTAACTTATGACGGGATTAGGTGTAGCTGTTGCCAGAAAATATATGGTCTTCGGGGCTTTGTAAATCATGCTGGAGAAAATGGTGACTGCAGGCCTTCTGCTAGCATATTTTTGAGGGATCGTAGGTCACTCTTAGATTGCATGATAAAAATATATGCAGGCCTCCAAAGCCTATTAGGAAAGTCACTTACAGTGGATCTGAACAATCTAACTTGGACCTTGGAGAAGTTTAACAACTCTGAGAGTCCTGATGTTGGCAGTTCTCAGAATTATTTATTGGCAGAGAAATACAGCAAACTCAGTGTTGCACTTTCGGTGATGCATGAGTGTTTTGATCCCCCGAAGAACCCTTTGACTGGTAGAGATATCATTGATGATGTTATGTTCAACTCAAGGTCAGAGCTCAATCGATTGAATTTCCAGGGTTTCTACACTGTACTTCTGGAGCAAAATGAAGAATTGATTACTGTTAGATTGCATATTTTTGAGGGAATGGTGACCGCAGGCCTTCTGCTAGCATATTTTTTAGGGAATGGTGACTGCAGGCCTTCTGCTAGCATATTTTTGAGAGATGGTAGGTAA 648 0.4213 MPRCKVHYWTEGGSNTDVAQGRVTYDGIRCSCCQKIYGLRGFVNHAGENGDCRPSASIFLRDRRSLLDCMIKIYAGLQSLLGKSLTVDLNNLTWTLEKFNNSESPDVGSSQNYLLAEKYSKLSVALSVMHECFDPPKNPLTGRDIIDDVMFNSRSELNRLNFQGFYTVLLEQNEELITVRLHIFEGMVTAGLLLAYFLGNGDCRPSASIFLRDGR* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00008 215 PANTHER PHD FINGER PROTEIN 12 2 73 IPR042163 GO:0003714|GO:0045892
Lapu1g00008 215 Pfam Tify domain binding domain 21 72 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00008 Lapu-Chr1 1174975 1177175 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00008 20 74 PHD Transcription Factor Family AT5G58610 43.636 3.73e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00008 - - pvu:PHAVU_008G260100g 192.2