Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01780 ATGCACAAAACACATTTCACGATTGTCTCAAACGAAAATGAAAGCTATTTCACATTCACAACTTCAAATGAAGAGCTCACAAGATGGGTGCTTTTAGAAACAGGGCAGCTGATAAATCGAAATGGAGATAATAATGTTAGTAGGGCTGATATATGTTACGGCTACAACACAGATGAAGGATGCCAACAATGGGAGGAGATACCCTTCTGCAGGCATCGTGGTAATGTATTTGAACGCAAGGAAGGGTACCCCAATTTTAACAACAGAACCGAGCTAGCAAATTCTAGTTACGGCCCAAGTGATTGTAGGGATTTGTGCTGGAGAAACTGCACTTGTGTTGGATTCACAAATTATTATGATGATGGAACTGGTTGTAAATTCCTTCACTGGAACTCAACGGAAAGTAATATTTATGCAAGTGGGGGCTATAAGTTTTACGAACTTGTCAACAACACCCATCACATAAACAGCACCCATCACAAAGAGAAGAAAAGAAAAGGGATGGAGACTAAGAATGTGGCAGATTTAGCAGCATCAAATAGATTCTACGATGTCCAAGATTTTGACGATGAATTCAAGATTAGACAAAATCTAGAAGTGTTTAACTATACATTGGTATTGTCGGCAACAGACGATTTTTCACCAGAAAACAAATTAGGACAAGGAGGATTTGGACCTGTTTATAAGGGAACCCTTCCTACTGGGCAGGAAGTTGCCATAAAAAGACTCTCAAAAACATCAAGACAAGGAATTGTGGAATTCAAAAGTGAACTTGTGCTTATATGTGAACTTCAACACACGAATCTTGTACAGCTAGTTGGATATTGCATTCATGAAGAAGAAAGGATTCTAATTTATGAGTACATGCCAAAGAAAAGCTTGGATTACTATCTATTTGATGGTGACAGAAGCAAGTTATTGGACTGGAAGAAGCGCTTCAATATAATAGAAGGAATCTCTCAAGGATTACTCTATCTTCATAAGTACTCCAGGTTAAAAATAATTCACAGAGACTTGAAAGCTAGTAACATACTTCTTGAAAAGAATATGAATCCAAAAATATCTGATTTTGGAATGGCAAGAATGTTTACACAAGAAGAGTCCATGAAAAATACAAATAGGATTGTTGGAACCTAG 1137 0.3729 MHKTHFTIVSNENESYFTFTTSNEELTRWVLLETGQLINRNGDNNVSRADICYGYNTDEGCQQWEEIPFCRHRGNVFERKEGYPNFNNRTELANSSYGPSDCRDLCWRNCTCVGFTNYYDDGTGCKFLHWNSTESNIYASGGYKFYELVNNTHHINSTHHKEKKRKGMETKNVADLAASNRFYDVQDFDDEFKIRQNLEVFNYTLVLSATDDFSPENKLGQGGFGPVYKGTLPTGQEVAIKRLSKTSRQGIVEFKSELVLICELQHTNLVQLVGYCIHEEERILIYEYMPKKSLDYYLFDGDRSKLLDWKKRFNIIEGISQGLLYLHKYSRLKIIHRDLKASNILLEKNMNPKISDFGMARMFTQEESMKNTNRIVGT* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01780 378 Gene3D Phosphorylase Kinase; domain 1 171 288 - -
Lapu11g01780 378 SMART serkin_6 213 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu11g01780 378 ProSiteProfiles PAN/Apple domain profile. 70 150 IPR003609 -
Lapu11g01780 378 Pfam Protein tyrosine and serine/threonine kinase 216 371 IPR001245 GO:0004672|GO:0006468
Lapu11g01780 378 ProSiteProfiles Protein kinase domain profile. 213 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu11g01780 378 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 80 378 - -
Lapu11g01780 378 SUPERFAMILY Protein kinase-like (PK-like) 193 378 IPR011009 -
Lapu11g01780 378 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 289 378 - -
Lapu11g01780 378 FunFam Cysteine-rich receptor-like protein kinase 10 159 288 - -
Lapu11g01780 378 Gene3D Transferase(Phosphotransferase) domain 1 289 378 - -
Lapu11g01780 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 334 346 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01780 Lapu-Chr11 30516010 30517733 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01780 187 378 Receptor kinase-like Gene Family AT4G04570 58.333 1.01e-74 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lapu11g01780 PK_Tyr_Ser-Thr 2.3e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01780 - - gmx:100820258 575.089