Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01762 ATGCAAAACAACTATGATTATGTTGGAAACCTTAAAAGGTTGAGAATTGAAGGAAAAATGGAAGAGAGTTGTTGCATATGTCTTGAGGAACTTTCAATTGGATCAAGAGCAATTCGTATATCTCACCCATGTTCTCATATCATTCATGAACACTGCATCACAAAATGGCTTCATGTCAATCACACATGTCCTTTGTCTCGTAGGAAAATTTAG 213 0.3568 MQNNYDYVGNLKRLRIEGKMEESCCICLEELSIGSRAIRISHPCSHIIHEHCITKWLHVNHTCPLSRRKI* 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01762 70 Pfam Ring finger domain 23 65 IPR001841 -
Lapu11g01762 70 ProSiteProfiles Zinc finger RING-type profile. 24 67 IPR001841 -
Lapu11g01762 70 SUPERFAMILY RING/U-box 19 68 - -
Lapu11g01762 70 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 70 IPR013083 -
Lapu11g01762 70 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 9 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01762 Lapu-Chr11 29830070 29830282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01762 8 70 C3H Transcription Factor Family AT1G80400 38.095 1.45e-10 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01762 - - pvu:PHAVU_007G098000g 110.153