Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01739 ATGGATTGTTCAGCTGCAAAAAAGACACAAAAGGCTGACCGAGAAAAGTTAAGGAGGGATCGACTCAATGAACAGTTTGTAGAACTGGGTAACGTTTTAGACCCTGACAGGCCCAAAAATGACAAAGCAACCATTCTAGGTGATACAATTCAATTGCTGAAGGACCTTACTTCTGAAGTTAGTAAACTCAAAGAAGAATGTGCTACACTAAATGAAGAATCTCGTGAGTTGACTCAGGAGAAAAATGATCTCAGAGAAGAAAAGGCTTCTCTTAAATCGGATATTGATAACTTGAATAATCAGTATCAGCAGCAGCTCAGGACTATGTTCCCATGGACTGCAATGGATCATTCAGTTGTGATGGCTCCACCGTCATATCCCTTTCCAATGCCAATGGCAGTACCTCCTGGTCCAATTCCCATGCAACCATTCCCCTACTTTGCTAATCAACACCCTGCAGTCATCTCGAACCCTCGTTCAACTTTCGTTCCTTATTTAGCCCCCAATACCATTGTTGAACAACAATCCACCCAGTTCATTTCACCTCCACTTCATCCAGGCAGTCGGTCCAATGTGTCTGAAAAGCAAGGGTCCAAAAGCAAATCATCCAGGGAGAGCAAGGCCGAGAAGAATGAGGATTCTAATGATGTCACTACGGACCTTCAGTTGAAGACTCCTGGGTCTTCCTCAGATCAGGTTAGAGTAGTTTGCCAAGGAAACTTTGCTGTTTGCATTAGGCATTGCAATTTATCATCTGATTCGGGTTTTGTTTGTGTGCCATGTTTTGCAGGATTTATCATCAGGACAAAGAAAATCTGGCAAGTTGTCGAGGAGGGAAAGCAGCCTCTGCTCGGAAGGGAGCTCATTGGGTGGGTGCTCTTCTTCTCATAG 891 0.44 MDCSAAKKTQKADREKLRRDRLNEQFVELGNVLDPDRPKNDKATILGDTIQLLKDLTSEVSKLKEECATLNEESRELTQEKNDLREEKASLKSDIDNLNNQYQQQLRTMFPWTAMDHSVVMAPPSYPFPMPMAVPPGPIPMQPFPYFANQHPAVISNPRSTFVPYLAPNTIVEQQSTQFISPPLHPGSRSNVSEKQGSKSKSSRESKAEKNEDSNDVTTDLQLKTPGSSSDQVRVVCQGNFAVCIRHCNLSSDSGFVCVPCFAGFIIRTKKIWQVVEEGKQPLLGRELIGWVLFFS* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01739 296 PANTHER TRANSCRIPTION FACTOR BHLH121 2 232 IPR044579 GO:0003700|GO:0006879
Lapu11g01739 296 Pfam Helix-loop-helix DNA-binding domain 7 56 IPR011598 GO:0046983
Lapu11g01739 296 MobiDBLite consensus disorder prediction 198 217 - -
Lapu11g01739 296 Coils Coil 5 25 - -
Lapu11g01739 296 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 56 IPR011598 GO:0046983
Lapu11g01739 296 CDD bHLH_AtILR3_like 11 85 - -
Lapu11g01739 296 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 6 76 IPR036638 GO:0046983
Lapu11g01739 296 MobiDBLite consensus disorder prediction 179 197 - -
Lapu11g01739 296 Coils Coil 46 108 - -
Lapu11g01739 296 SMART finulus 12 62 IPR011598 GO:0046983
Lapu11g01739 296 Gene3D - 5 85 IPR036638 GO:0046983
Lapu11g01739 296 MobiDBLite consensus disorder prediction 179 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01739 Lapu-Chr11 28629167 28634756 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01739 1 232 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 64.706 8.25e-92 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu11g01739 HLH 1.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01739 - - gmx:100804250 387.882