Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lapu11g01729 | ATGCAAAATAACCATGATTCTGTTAGAAATCTTGAGAGGTTGAGAATTGAAAAGAAAATGGAAGAGAATTGTTGCATATGTCTTGAGGAACTTTCAATTGGATCAAGAGCAATTTGTATACCTCACCCATGTTCTCATATCTTTCATGAACACTGTATCACAAAATGGCTTAATGTCAATCACACATGTCCTTTGTGTCGTAGGAACATTTAG | 213 | 0.3474 | MQNNHDSVRNLERLRIEKKMEENCCICLEELSIGSRAICIPHPCSHIFHEHCITKWLNVNHTCPLCRRNI* | 71 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lapu11g01729 | 70 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 70 | IPR013083 | - | |
Lapu11g01729 | 70 | ProSiteProfiles | Zinc finger RING-type profile. | 24 | 67 | IPR001841 | - | |
Lapu11g01729 | 70 | SUPERFAMILY | RING/U-box | 16 | 70 | - | - | |
Lapu11g01729 | 70 | SMART | ring_2 | 24 | 66 | IPR001841 | - | |
Lapu11g01729 | 70 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 6 | 68 | - | - | |
Lapu11g01729 | 70 | Pfam | Ring finger domain | 23 | 67 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lapu11g01729 | Lapu-Chr11 | 28245064 | 28245276 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lapu11g01729 | 6 | 70 | C3H Transcription Factor Family | AT5G66070 | 38.806 | 2.66e-14 | 62.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lapu11g01729 | - | - | pvu:PHAVU_007G098000g | 125.176 |