Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01729 ATGCAAAATAACCATGATTCTGTTAGAAATCTTGAGAGGTTGAGAATTGAAAAGAAAATGGAAGAGAATTGTTGCATATGTCTTGAGGAACTTTCAATTGGATCAAGAGCAATTTGTATACCTCACCCATGTTCTCATATCTTTCATGAACACTGTATCACAAAATGGCTTAATGTCAATCACACATGTCCTTTGTGTCGTAGGAACATTTAG 213 0.3474 MQNNHDSVRNLERLRIEKKMEENCCICLEELSIGSRAICIPHPCSHIFHEHCITKWLNVNHTCPLCRRNI* 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01729 70 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 70 IPR013083 -
Lapu11g01729 70 ProSiteProfiles Zinc finger RING-type profile. 24 67 IPR001841 -
Lapu11g01729 70 SUPERFAMILY RING/U-box 16 70 - -
Lapu11g01729 70 SMART ring_2 24 66 IPR001841 -
Lapu11g01729 70 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 6 68 - -
Lapu11g01729 70 Pfam Ring finger domain 23 67 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01729 Lapu-Chr11 28245064 28245276 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01729 6 70 C3H Transcription Factor Family AT5G66070 38.806 2.66e-14 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01729 - - pvu:PHAVU_007G098000g 125.176