Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01727 ATGGAAATGCAGTGGTCAATCATAGATGATGGTTGTATCATTGATTTGATGGATTTGGGTCACCGCAGTAACAACATGAATAGGAGATTTCTAAGATCAACTCAAGATGGTGGTGTTCATATCTTTGATTCCATGAACTTGGTTCGCAACAACATGCAAAACACTGGAAGTAGAATGCTAAGATCAACCGAAGATGGTGTGTTCATCTTTGATTCCATGCAAAACAACCATGATTCTGTTGGAAATCTTGAAAGGATAAGAATTGAAGAAAAAACAAAAGAGAGTTGTTGCATATGTCTTGAAGAACTTTCAATTGGATCAAGAGCAATTAGTATACCTCACCCATGTTCTCATATTTTTCATGAACATTGCATCACAAAATGGCTCAACCTCAACCACACATGTCCTTTATGTCGTAGTGCAAATATG 429 0.3683 MEMQWSIIDDGCIIDLMDLGHRSNNMNRRFLRSTQDGGVHIFDSMNLVRNNMQNTGSRMLRSTEDGVFIFDSMQNNHDSVGNLERIRIEEKTKESCCICLEELSIGSRAISIPHPCSHIFHEHCITKWLNLNHTCPLCRSANM 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01727 143 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 142 IPR013083 -
Lapu11g01727 143 ProSiteProfiles Zinc finger RING-type profile. 96 139 IPR001841 -
Lapu11g01727 143 Pfam Ring finger domain 95 139 IPR001841 -
Lapu11g01727 143 SMART ring_2 96 138 IPR001841 -
Lapu11g01727 143 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 26 139 - -
Lapu11g01727 143 SUPERFAMILY RING/U-box 87 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01727 Lapu-Chr11 28221473 28222073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01727 11 139 C3H Transcription Factor Family AT5G66070 29.851 1.57e-13 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01727 - - pvu:PHAVU_007G097900g 169.859