Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01691 ATGGGTCGTCGGAAAATTGAGATCGTGAGAGTGAAGGACACGAACACGAGACAAATCACGTTTTCAAAGCGTCGAACAGGTTTGTTCAAGAAAGCTAATGAATTGTCCATTATGTGTGGTGCAAAGATTGCTATTGTCGTGTTCTCTCCAGGGAACAAACCTTACTCATTTTCCCATCCAGGAGTTCATGTTGTTGCTGCTGAATTCCTTCAGCAAGAGCTCAAATCCAACCAAGTCCAAAGAGGACCCTCTTATGATGTTTCTGAGATTCATCACTTCAATCTACAACTTGTTGATGTGATGAAACAGTTGGCTGATGAAGAACATAAAAGTGCAATGCTTGATGAAGCTATTGATCGTGGCAAAAGAACTCAACTCTCTGAACTTCAAAGCTTACACACTTCTCTTTCTGATATCTATTCAAAAGTGAAAAGTGAGATCGAGGCTGCAGAAACCATGATTCTCCTTTCACGAGAAGGAGTAGAATTTCCTGTTGCAACAAGAAAGGAAAATAACAGTGACAATTTATTTGATATTGAATCCAAACTTGTCTGA 555 0.3964 MGRRKIEIVRVKDTNTRQITFSKRRTGLFKKANELSIMCGAKIAIVVFSPGNKPYSFSHPGVHVVAAEFLQQELKSNQVQRGPSYDVSEIHHFNLQLVDVMKQLADEEHKSAMLDEAIDRGKRTQLSELQSLHTSLSDIYSKVKSEIEAAETMILLSREGVEFPVATRKENNSDNLFDIESKLV* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01691 184 Gene3D - 14 83 IPR036879 GO:0003677|GO:0046983
Lapu11g01691 184 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lapu11g01691 184 CDD MADS 2 60 - -
Lapu11g01691 184 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lapu11g01691 184 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lapu11g01691 184 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lapu11g01691 184 SUPERFAMILY SRF-like 1 72 IPR036879 GO:0003677|GO:0046983
Lapu11g01691 184 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lapu11g01691 184 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lapu11g01691 184 PANTHER MADS BOX PROTEIN 3 143 - -
Lapu11g01691 184 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01691 Lapu-Chr11 27039035 27039708 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01691 1 69 Type I MADS-box Gene Family AT3G66656 65.217 1.25e-29 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lapu11g01691 SRF-TF 1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01691 - - gmx:100791127 171.4