Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01683 ATGACAGAGGTGGTTCCTGGAATTGAAGAGGCCGCTGAACCTCCAGCATCACCTCAACCATCTGCTGATGTGCCACATAATATGGAAACAGAAAAATTGAGTCCTACAAAGTATTCTATTATCAGTAGGAATGGGGTTGGGACCACAGGAAAACACATAAATTTGCTTGTGAATCTATTCAGAGTTTCTGTTAATGCTCCAGATACCGTGTTTTTCCAGTATAGTGTTGCTATTACTTTAGAGGATAAACGACCAGTTGAAAGCAAGGGCATTGGGAGAAAAGTGATTGATAGGCTTTACCAAATATACTCTTCTGAACTTGGTGGCAAAAGGTTTGCATATGATGGAGGGAAAACTTTGTACACAGCAGGTCCTCTGCCACTAAATAAGTATGAGTTCAAAGTGTTGCTGGAGGAATCATTTAGAAAACGTGCAGATTGTCCTGGTGCTGATGGAAGCCTTCGTGAAGGAACTAAAAGGTCAAAACATTCTTTTCAGTCAAAGACGTTCATGGTGGAGATAAGTTTTGCTGCCAAAATACCCCTGCTGTCCATTGCTATTGCCCTTAAAGAGGGTGATTCAGATGCCAATTCTGAAGATCCGTTGAGAGTGCTTGATACTGTGCTGAGGCAGCGCACAGCCAACTGTGGGTGTCTTTTGGTAAGGCAATCTTTTTTTCATGATGACCCAAGAAATTTCACTGATGTTGGGGCTGGTGTAACAGCAGTCTCGGGTTTTCATTCAAGTTTTCGTCCCACACAGCGAGGATTGACTCTCAATATGGACGTGTCAACAACTATGATCATAAAACCTGGTCCAGTAATTGATTTTCTGTTATCAAATCAGAAAGTGAAGGAACCCCGTCATATTGACTGGCAAAAGGCCAAAAAAATGCTTAAAAATTTAAGGGTGCAAGCAACTCATCGAAACCTGGAATTTAAAATTTCTGGCTTGAGTGACAGACCATGCATTCAGCAACTTTTTAGTATGAAGGTTAAAAATGACAACAGCAGTAAAGAAGGACAGATGGTGGAGATTACTGTATATGAATATTTTGCCAAACATTGTGGTATTGATCTGACCTCATCTGCTTATCTTCCATGTCTTGATGTTGGAAAACCAAAACGGCCTAACTATCTTCCTTTGGAGCTATGTTCACTTGTGTCCCTCCAACGGTATACAAAGGTACTCTCTCCAATACAAAGGACATCTTTAGTTGAGAAATCACGCCAAAAGCCTCAAGATAGAATCAAAATTCTGAAAAATGCTGTAGGAAACTATTGCTACGATGATGATCCTGTTCTTGCTGCATGTGGCATTTCTGTTGAGAAAGAACTGGCTCTAGTTAAAGGTCGTGTCCTTGAGACACCAAAGTTGAAGGTTGGTAAGAATGATGTTTGCATCCCATGTAATGGAAGGTGGAGTTTTAATAATAAGACACTTCTACAACCATCGCATATTGATTATTGGGCTGTTGTCAACTTTTCTGCAAGATGTGATACTAGTTATATATCAAGGGAGCTGATCAGATGTGGAATGAGCAAGGGCATTAACATTGAACGCCCATATTCTTTGGTAGAGGAGGAACCGCAGTTGACAAAATCTAGCGCTGTTGCAAGGGTTGAAAGAATGTTTGACCTGCTGACATCAAAACTAAATAGAGAACCAAAGTTGATTCTTTGTGTCTTGCCAGAGAGGAAAATTAGTGATTTATATGGGCCTTGGAAGAAGAAGTGTCTGAGTGAAATTGGTGTTGTGACACAGTGCATTTCCCCTGTCAAGATCACTGATCAGTACCTTAATAATGTACTTCTTAAAATCAATTCTAAGCTTGGAGGAATAAATTCTCTGTTGGCAATAGAGCATTCTGGGAATCTTCCCCTAATTAAAGATACCCCAACTATGATTTTGGGGATGGATGTCTCTCACAGTTCGCATGGTCTATTAGATATTCCATCAGTAGCAGCTGTTGTTGGATCTCGATGTTGGCCACTGATTTCAAGGTATAGAGCGTCTGTGAGAATGCAGGCATCTAAGGTGGAGATGATTGATGCTCTGTACAAGCCATTGGAAAATGGGGGTGATGATGGTATTATCAGGGAATTGCTTTTAGATTTCTATGACTCAAGTAACGGCCGCAAGCCAACTCAAGTTATTGTCTTCAGGGATGGAGTTAGCGAATCACAATTTAAACAAGTTTTGAATGTCGAGCTTAACCAGATAATCAAGGCCTATCAACGTCTTGGTGAGGATGATGTTCCCAAGTTCACCGTGATAGTGGCACAGAAAAATCATCATACTAGGCTGTTTCAGGCTAATAGTCCCGAAAATGTTCCTCCTGGGACTGTTGTGGACACAGCAATCACGCATCCAAGAAATTATGATTTTTACATGTGTGCTCATGCGGGGATGATGGGAACATCTAGACCTGTACATTATCATGTGCTACTTGATGAGATTGGTTTCTCAGCTGACGACTTACAAAATTTGATTAACTCGCTGTCCTATGTGAACCAAAGAAGCACATATGCGACCTCAGTTGTGGCACCTATATGCTATGCTCACCATGCTGCAGCTCAGATGGGACGATTTTTGAATCTTAATGATTTATCAGAAACGGCTTTCGGTCCTGCTGCAGAGGGAAACACCCCGATCCCTGAGCTTCCAAGACTGCACAAGAATATCAGGAGTTCCATGTTCTTCTGTTGA 2709 0.4131 MTEVVPGIEEAAEPPASPQPSADVPHNMETEKLSPTKYSIISRNGVGTTGKHINLLVNLFRVSVNAPDTVFFQYSVAITLEDKRPVESKGIGRKVIDRLYQIYSSELGGKRFAYDGGKTLYTAGPLPLNKYEFKVLLEESFRKRADCPGADGSLREGTKRSKHSFQSKTFMVEISFAAKIPLLSIAIALKEGDSDANSEDPLRVLDTVLRQRTANCGCLLVRQSFFHDDPRNFTDVGAGVTAVSGFHSSFRPTQRGLTLNMDVSTTMIIKPGPVIDFLLSNQKVKEPRHIDWQKAKKMLKNLRVQATHRNLEFKISGLSDRPCIQQLFSMKVKNDNSSKEGQMVEITVYEYFAKHCGIDLTSSAYLPCLDVGKPKRPNYLPLELCSLVSLQRYTKVLSPIQRTSLVEKSRQKPQDRIKILKNAVGNYCYDDDPVLAACGISVEKELALVKGRVLETPKLKVGKNDVCIPCNGRWSFNNKTLLQPSHIDYWAVVNFSARCDTSYISRELIRCGMSKGINIERPYSLVEEEPQLTKSSAVARVERMFDLLTSKLNREPKLILCVLPERKISDLYGPWKKKCLSEIGVVTQCISPVKITDQYLNNVLLKINSKLGGINSLLAIEHSGNLPLIKDTPTMILGMDVSHSSHGLLDIPSVAAVVGSRCWPLISRYRASVRMQASKVEMIDALYKPLENGGDDGIIRELLLDFYDSSNGRKPTQVIVFRDGVSESQFKQVLNVELNQIIKAYQRLGEDDVPKFTVIVAQKNHHTRLFQANSPENVPPGTVVDTAITHPRNYDFYMCAHAGMMGTSRPVHYHVLLDEIGFSADDLQNLINSLSYVNQRSTYATSVVAPICYAHHAAAQMGRFLNLNDLSETAFGPAAEGNTPIPELPRLHKNIRSSMFFC* 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01683 902 SUPERFAMILY Ribonuclease H-like 542 864 IPR012337 -
Lapu11g01683 902 SMART Piwi_a_2 558 866 IPR003165 GO:0003676
Lapu11g01683 902 SUPERFAMILY PAZ domain 266 429 IPR036085 GO:0005515
Lapu11g01683 902 Gene3D - 453 619 - -
Lapu11g01683 902 Pfam Piwi domain 558 865 IPR003165 GO:0003676
Lapu11g01683 902 Pfam Argonaute linker 1 domain 221 270 IPR014811 -
Lapu11g01683 902 Pfam PAZ domain 275 405 IPR003100 GO:0005515
Lapu11g01683 902 SMART DUF1785_2 219 271 IPR014811 -
Lapu11g01683 902 ProSiteProfiles PAZ domain profile. 296 389 IPR003100 GO:0005515
Lapu11g01683 902 ProSiteProfiles Piwi domain profile. 558 866 IPR003165 GO:0003676
Lapu11g01683 902 CDD Piwi_ago-like 433 860 IPR045246 -
Lapu11g01683 902 Gene3D - 625 902 IPR036397 GO:0003676
Lapu11g01683 902 FunFam Protein argonaute 3 626 902 - -
Lapu11g01683 902 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 32 866 - -
Lapu11g01683 902 CDD PAZ_argonaute_like 271 388 - -
Lapu11g01683 902 Pfam N-terminal domain of argonaute 51 209 IPR032474 -
Lapu11g01683 902 Pfam Argonaute linker 2 domain 418 460 IPR032472 -
Lapu11g01683 902 MobiDBLite consensus disorder prediction 1 28 - -
Lapu11g01683 902 FunFam Protein argonaute 7 266 393 - -
Lapu11g01683 902 Gene3D paz domain 265 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01683 Lapu-Chr11 26689578 26704778 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01683 43 902 Eukaryotic Initiation Factors Gene Family AT5G43810 36.404 1.17e-160 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01683 K11593 - gmx:100778875 1543.87