Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01677 ATGTCTCAACCTAAGAACCCTAAAATGCACTCCTCCACCACTCTCCTCCACGATCTTCCTCCCCTGAAGCGACTTCGCCTCATTCAACAACAACAACAGAATCACCAAAATCACTCTTCTCACTCTTCGTCTTTACCTGCCAAAAAACGCAGAGACTCTCGAACCCCTTCTCCACCCTCCACCACCCTTAACAACTTTTCCCTTCCCGCCAAGAAAAGAGTCTGGGCCCCATTCCCCCAAACTCCCCCCTCCTCCGACGACGCCGTTCCTCCCTTCCAAACCCCACCCGCCTCAAACGGCGCCGGCGCCGGCGCCGTTCCTTCCTTTGATGCGCCATCCGCCTCCACCGACGCCGTTCCTGCATTCGATCTAAACGTCGAGTACAACCCCAATCTCGGACAATCCGAAAACAACGGCGGCGATGAAGACGATGACGATGGGGTTTTGTGCTGTGTGTGCCAGAGCACGGACGGGGATCCTGCGGACCCGATCGTGTTCTGCGACGGGTGTGACCTCACGGTGCACGCCTCCTGCTACGGACACCCTTTGTCGAAAGGTATCCCCGACGGAGACTGGTTCTGCGAACGGTGTCGTATCGGAGAAGCCAGCGCCAGCGCCAGCGACGGCAAAAGCGTCACGCGTTGCGCGTTGTGTCCCGCGAGGGATGGCGCAATGAAGCGCACTGCGGAGGGCGCGTGGGCGCACGTTGTGTGTGCGCTGTTCGTTCCCGAGGTGTTTTTCCTCGACCCAGAAGGGAGGGAGGGGATCGATTGCTCCATGGTTCCGAAGAAGAGGTGGTCGCAAAGGTGCTACCTTTGCGAGTGTCGTGAAGGTTGTTCTCTCGTGTGTTCTGAGCCAAAGTGTGGGTTGGCGTTTCATGTGACTTGTGCGCTGAAGGAGGAGCTTTGGATTGAATACAAGGAAGGGAAGAAAGGGAGCACCATTGTTGCTGGCTTCTGCAAAACCCATACCCAAATATGGGAAAAGCAATCTGGAAAGTACAAAATTGTCCCTCTTGAAGATGAAAAGTAG 1032 0.5601 MSQPKNPKMHSSTTLLHDLPPLKRLRLIQQQQQNHQNHSSHSSSLPAKKRRDSRTPSPPSTTLNNFSLPAKKRVWAPFPQTPPSSDDAVPPFQTPPASNGAGAGAVPSFDAPSASTDAVPAFDLNVEYNPNLGQSENNGGDEDDDDGVLCCVCQSTDGDPADPIVFCDGCDLTVHASCYGHPLSKGIPDGDWFCERCRIGEASASASDGKSVTRCALCPARDGAMKRTAEGAWAHVVCALFVPEVFFLDPEGREGIDCSMVPKKRWSQRCYLCECREGCSLVCSEPKCGLAFHVTCALKEELWIEYKEGKKGSTIVAGFCKTHTQIWEKQSGKYKIVPLEDEK* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01677 343 SMART PHD_3 269 324 IPR001965 -
Lapu11g01677 343 SMART PHD_3 149 198 IPR001965 -
Lapu11g01677 343 MobiDBLite consensus disorder prediction 1 116 - -
Lapu11g01677 343 MobiDBLite consensus disorder prediction 26 43 - -
Lapu11g01677 343 CDD PHD_BRPF_JADE_like 149 197 - -
Lapu11g01677 343 ProSitePatterns Zinc finger PHD-type signature. 150 197 IPR019786 -
Lapu11g01677 343 Pfam PHD-zinc-finger like domain 214 323 - -
Lapu11g01677 343 ProSiteProfiles Zinc finger PHD-type profile. 147 200 IPR019787 -
Lapu11g01677 343 ProSiteProfiles Extended PHD (ePHD) domain profile. 212 324 IPR034732 -
Lapu11g01677 343 SUPERFAMILY FYVE/PHD zinc finger 137 201 IPR011011 -
Lapu11g01677 343 PANTHER PHD FINGER PROTEINS 139 324 - -
Lapu11g01677 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 210 326 IPR013083 -
Lapu11g01677 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 209 IPR013083 -
Lapu11g01677 343 Pfam PHD-finger 150 198 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01677 Lapu-Chr11 26474906 26476645 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01677 30 343 C2H2 Transcription Factor Family AT3G14740 45.480 3.96e-95 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lapu11g01677 zf-HC5HC2H_2 4.5e-28 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01677 K11380 - gmx:100802652 426.787