Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01671 ATGAAGATTCAGTGCAACGTCTGCGAAGCCGCGGAGGCCAAGGTCCTCTGTTGCGCCGACGAGGCCGCACTGTGCTGGGAATGCGACGAGAAGGTTCACGCCGCAAACAAGCTCGCCACCAAGCACCAGAGAGTTCCGCTTTCTCTCTCTGCGTCCCACGTTCCAAAGTGTGATATATGCCAGGAAATGGTTGGTTATTTCTTCTGTTTAGAGGATCGGGCTTTGCTATGTAGGAATTGTGATGTATCTATTCACACTGCTAATGCCTGTGTCTCTGGTCATCAAAGGTTTTTGCTTACTGGTGTGAGAGTAGGCCTTGAAGCTACTGAGCGCGGTGCTTCCTCGTCCTCTATCAAGTCACAATCAGGGGAGAAAACATCTTATGCTAAATCTTCGTCCATCTCCAGAAATGTTTCTTCCCTTCCCCAGCCATCAAATTTTAATGAAGTGTTACCCCCCCAAGTGGGAGGAGTTGAGGACTTTCCACCGAACAAGGTGTCTTATGGTGGTGGCTATACTGCTGGAAACATCTCACACTGGCCCATTGAAGAATTTCTCGGGTTAAATGAATTCAGTCAGTATTATAATTATATGGATGGATCATCTAAGGCTGACAGTGGTAAACCTGGGGATTCTGATTCTTCTGTTTTGAGGTCAAGTGAAGAGGAAATGGATGATGATGGCTTCTTGGGGCGTGTCCCAGATTCATCCTGGACAGTTCCTCAGATCCCTTCTCCTCCTACGGCGTCCGGCTTATATTGGCCGGAAGTTCCTCAATATACATCTGACAATGCTATGTTTGTTCCTGACATATGCTTTTCTCGCCGGCGGCAGCCTCACCATGTTCATAATTCTGTTCATTCGAAACGCAGGAGGAACCTATAA 885 0.4768 MKIQCNVCEAAEAKVLCCADEAALCWECDEKVHAANKLATKHQRVPLSLSASHVPKCDICQEMVGYFFCLEDRALLCRNCDVSIHTANACVSGHQRFLLTGVRVGLEATERGASSSSIKSQSGEKTSYAKSSSISRNVSSLPQPSNFNEVLPPQVGGVEDFPPNKVSYGGGYTAGNISHWPIEEFLGLNEFSQYYNYMDGSSKADSGKPGDSDSSVLRSSEEEMDDDGFLGRVPDSSWTVPQIPSPPTASGLYWPEVPQYTSDNAMFVPDICFSRRRQPHHVHNSVHSKRRRNL* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01671 294 MobiDBLite consensus disorder prediction 113 146 - -
Lapu11g01671 294 CDD Bbox1_BBX-like 5 47 - -
Lapu11g01671 294 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Lapu11g01671 294 FunFam B-box zinc finger protein 22 1 93 - -
Lapu11g01671 294 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Lapu11g01671 294 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lapu11g01671 294 MobiDBLite consensus disorder prediction 201 240 - -
Lapu11g01671 294 MobiDBLite consensus disorder prediction 215 230 - -
Lapu11g01671 294 Gene3D Classic Zinc Finger 1 92 - -
Lapu11g01671 294 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 275 - -
Lapu11g01671 294 SMART bboxneu5 52 99 IPR000315 GO:0008270
Lapu11g01671 294 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lapu11g01671 294 CDD Bbox1_BBX-like 56 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01671 Lapu-Chr11 26361899 26366368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01671 1 292 C2C2-CO-like Transcription Factor Family AT1G78600 47.130 5.13e-87 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Lapu11g01671 zf-B_box 2.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01671 - - gmx:100808889 526.168