Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01668 ATGGCGCTGCTGTGTGGTTCAACTTCCGTGACTCCATTACTTTCCCACAAGAATGTTGTCGCAGTCTCACCAAAATCTTCCTTTGTGGGCTTCCAATCGCCACTTCCAAAGCTTACATTATCTTCTTCTGTTCGAACCCTTTTACCCTCAATTTCCCCTATCCGTTGTCAACAGGACTCTACTACTACTACTACTGCTACTACTGCCCCTGTTACGGAAGACCCGCGCTTCGCCTGCGTCGAGCCCGAACCCCGATTCAAAGGCCCGGACATTTGGAACAAGAGCTGGTATCCAAAAGCTGCAGATCATGTGAATACAGAGAAAACATGGTATGTTGTTGACGCTACAGATAAAGTTCTTGGAAGATTGGCTTCAACGATTGCTATTCACATCCGAGGGAAAAACTTAGCAACCTACACACCCAGTGTGGACATGGGTGCATTTGTAATTGTGGTAAATGCAGAAAAGGTCGCTGTGTCTGGGAAAAAGAGGACCCAAAAGCTTTATAGAAGACACTCTGGAAGACCTGGTGGTATGACGGTGGAGACATTTGCTCAGCTGCAAAACAGAATTCCTGAAAGAATTATTGAACATGCTGTTCGTGGCATGCTTCCAAAAGGGAGGCTTGGCAGGAGACTATTCACCCACCTGAAGGTTTACAAGGGCCCTGATCATCCACATGCGGCACAGAAGCCCATTGACTTGCCAATAAGGGATAAGAGAATAGAACTCCAGAAATAG 741 0.4669 MALLCGSTSVTPLLSHKNVVAVSPKSSFVGFQSPLPKLTLSSSVRTLLPSISPIRCQQDSTTTTTATTAPVTEDPRFACVEPEPRFKGPDIWNKSWYPKAADHVNTEKTWYVVDATDKVLGRLASTIAIHIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFAQLQNRIPERIIEHAVRGMLPKGRLGRRLFTHLKVYKGPDHPHAAQKPIDLPIRDKRIELQK* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01668 246 Pfam Ribosomal protein L13 108 226 IPR005822 GO:0003735|GO:0005840|GO:0006412
Lapu11g01668 246 PANTHER RIBOSOMAL PROTEIN L13 95 241 IPR005822 GO:0003735|GO:0005840|GO:0006412
Lapu11g01668 246 SUPERFAMILY Ribosomal protein L13 104 237 IPR036899 GO:0003735|GO:0005840|GO:0006412
Lapu11g01668 246 CDD Ribosomal_L13 110 223 IPR005822 GO:0003735|GO:0005840|GO:0006412
Lapu11g01668 246 FunFam 50S ribosomal protein L13 94 237 - -
Lapu11g01668 246 ProSitePatterns Ribosomal protein L13 signature. 200 222 IPR023563 GO:0003735|GO:0005840|GO:0006412
Lapu11g01668 246 Gene3D Ribosomal protein L13 99 242 IPR036899 GO:0003735|GO:0005840|GO:0006412
Lapu11g01668 246 NCBIfam 50S ribosomal protein L13 104 235 IPR005823 GO:0003735|GO:0005840|GO:0006412
Lapu11g01668 246 Hamap 50S ribosomal protein L13 [rplM]. 110 245 IPR005822 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01668 112 245 Cytoplasmic Ribosomal Protein Gene Family AT3G07110 31.852 5.06e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01668 K02871 - gmx:100305981 442.965