Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01665 ATGAAGGACCTTTGTCCTACGAGGCAAATACTTGGGATTGGAGATACAGAGGTTGTTGAGAGGTTTAGCATGCATGAATCCAAACCTGTGAGTACACCATTGGAACACCACACGAAACTCTGGGTTTCCCAAGCTCCTAGCTCAAACGAAGAAAGAAGGATTATTCCATATGGTAATGGAAAAATGTCTTCTTCTTCCCATGAACTCATCCTCACAAGCTCCCCTGATGGCCCCATCATGGTCTACGAGACTGTTAGTCGCACCGCTGTGACACGATTCTCCAGTAGCCGATCTCCATGTCGTGGTTTGGCCATGGCGGGTCGTAGATTGCTTGCAGTCTCACACATATCCTCAGACTCGGGTGCAGGTTCGATCAACATCTACAATTGGCACGGTTCTACTGTGTTTCGCAACTTCCCTGTGCCCGAACCCGTTGCCCCTCTCATTGCTACACCCGATGGAGCATTTCTCTTTGGGGGTGGCATCTCAGGGAGTGTTTTATCTCTTTCGGCTTCCTCCGGAGATGTGATAAGATCAGTTCTTGTACACTCAAGTCCAGTTTCTAGTCTTCATCTGAGCGATGATGAGTCGCTTGTTATTTCAGGTAGTGAAGATGGCACCATTGCTGTTGTCCCTACCTTTAAGATCGTTGTTGGGGTTTCCTCGGAGGAGGATGTGGAAGATTTGATCTTGCACAAATGGAAGGCACATTCTGATTCTGTGACTGCTTTCAAGTCTTTGACGAGTACTTTGGTTTCTTGCTCATTGGACCGCACATGCAAGTTTTGGAATCTGCGAAATTGTGGGATCCTCATGCAGACTGTGGCATTTCCATGTTCCATTTTTGGGGTTGCGCTGGATTCAACAGGGTCAACATTTTACGCTGGTGGTGGAGATGGGTTTGTTTATAATGGATTGGTGACGGTTGGAAGCACAAAATCACTTGGTAAAGCCTCTGAGATGAGTAGTTGGTCTCAGTGCCATAATGGATCAATTGTGTCACTGGCTTGGGTTAATGAAGAGAGGAATCTGGTGTCTGCTGCAGAAGATGGGAGTGTGTGGATGTGGAATGTTGAGAAAGGAGAAGTGATAATGGTTTTTGGGAATGAACTGATAAACATCAGTGATATGATTGTGATTAAGGGAAATGCTGGTGGGTTTGGAGTGGGAAAGGGAAACAATGTTGTTGCAGTTGAAGAAGGTAATGTGTCCTTCACTTCTTCTGAGTTATGTGGTGAAGAGATGATTAACACTCTAAAACAAATCACAGAGCTCGGAGAGGTGAGAGAGATTGTGCTACAAGACAAGAAAAGGGCCATTGACATGTTGGAATCCGCCATTGAAATGTATGAGAGACTTTTGAAGCTTATCCTTAAGGAAGCTACCAAAGCCATTGAAGAGGAAGAAGATGATGAAGATGATGAACAGGAGCAGCAGAAAGATGATAAGAAGGAAGACAACTGA 1464 0.4529 MKDLCPTRQILGIGDTEVVERFSMHESKPVSTPLEHHTKLWVSQAPSSNEERRIIPYGNGKMSSSSHELILTSSPDGPIMVYETVSRTAVTRFSSSRSPCRGLAMAGRRLLAVSHISSDSGAGSINIYNWHGSTVFRNFPVPEPVAPLIATPDGAFLFGGGISGSVLSLSASSGDVIRSVLVHSSPVSSLHLSDDESLVISGSEDGTIAVVPTFKIVVGVSSEEDVEDLILHKWKAHSDSVTAFKSLTSTLVSCSLDRTCKFWNLRNCGILMQTVAFPCSIFGVALDSTGSTFYAGGGDGFVYNGLVTVGSTKSLGKASEMSSWSQCHNGSIVSLAWVNEERNLVSAAEDGSVWMWNVEKGEVIMVFGNELINISDMIVIKGNAGGFGVGKGNNVVAVEEGNVSFTSSELCGEEMINTLKQITELGEVREIVLQDKKRAIDMLESAIEMYERLLKLILKEATKAIEEEEDDEDDEQEQQKDDKKEDN* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01665 487 ProSitePatterns Trp-Asp (WD) repeats signature. 344 358 IPR019775 -
Lapu11g01665 487 Gene3D - 225 303 IPR015943 GO:0005515
Lapu11g01665 487 ProSitePatterns Trp-Asp (WD) repeats signature. 251 265 IPR019775 -
Lapu11g01665 487 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 325 362 - -
Lapu11g01665 487 SMART WD40_4 317 357 IPR001680 GO:0005515
Lapu11g01665 487 SMART WD40_4 27 83 IPR001680 GO:0005515
Lapu11g01665 487 SMART WD40_4 173 212 IPR001680 GO:0005515
Lapu11g01665 487 SMART WD40_4 267 304 IPR001680 GO:0005515
Lapu11g01665 487 SMART WD40_4 227 264 IPR001680 GO:0005515
Lapu11g01665 487 Pfam WD domain, G-beta repeat 231 264 IPR001680 GO:0005515
Lapu11g01665 487 Pfam WD domain, G-beta repeat 177 208 IPR001680 GO:0005515
Lapu11g01665 487 Pfam WD domain, G-beta repeat 327 357 IPR001680 GO:0005515
Lapu11g01665 487 PANTHER WD-REPEAT PROTEIN 18 67 461 IPR045227 -
Lapu11g01665 487 ProSiteProfiles Trp-Asp (WD) repeats profile. 180 210 IPR001680 GO:0005515
Lapu11g01665 487 MobiDBLite consensus disorder prediction 465 487 - -
Lapu11g01665 487 Coils Coil 433 485 - -
Lapu11g01665 487 MobiDBLite consensus disorder prediction 465 479 - -
Lapu11g01665 487 Gene3D - 35 213 IPR015943 GO:0005515
Lapu11g01665 487 SUPERFAMILY WD40 repeat-like 65 376 IPR036322 GO:0005515
Lapu11g01665 487 ProSiteProfiles Trp-Asp (WD) repeats profile. 325 366 IPR001680 GO:0005515
Lapu11g01665 487 Gene3D - 304 371 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01665 Lapu-Chr11 26235576 26243660 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01665 160 367 U-box Gene Family AT1G04510 26.512 4.40e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01665 K14829 - gmx:100785191 511.916