Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01641 ATGTCACATTCTGGGAAACCCGTCTCCGAGTTAGGGCTCAACGAGCGCTTGCGCGACTCACTGAGTTTCTCTGACGATTCCAACAAGCCCGATTTCCGAGAACTCGATTTGGGTTCGCCGGTTTCCACATTGCGGCCACGCCAGCACTTCCACCACCACAGTGCGCCCACCACGAGTAGTAACAGTAGCAGTAGTGGCGGCTCTACTGGGTCGGTTCCGGGTCAGAGCAACCCGGTATCGGGAAGATCCCATTCCGGCGAGTTGTCGGGGTCGAGTGAGACTAATAGTCCGACCCGAGTGTCCAAACCGGGTCACCGGAGATCTTATTCTGGTCAGAGTTTGAGTCAGGGTCAGAGATCCCCGTCGTCGTGCTCCGCTGCCGTGAATTCGCCGCCGCTGAATGTTCTACCGGCAGGGAACATTTGCCCGTCCGGGAGGGTTCTCAAGGCGGCGACGGTGGCGGCAGCGGCGAGCCGGAGCTCCAGGAGTGACGTATTGGGATCCGGCACGGGGAATTACGGCCACGGGAGCATAATGCGCGGCGGCAAGGGTGGCGGTGGGAACAGCGGTGGTGGTGATGCGGCGAATGTTAAGATCGGCGGCGGCGATTCGGGGAAGCGCGTGGATCCGGAGGAGGTGAAGAGGATGGGGAATGAGGAGTATAAGAGAGGGCACTTTGGTGAGGCGTTGTGTTTGTATGATCGGGCAATTGCGATGTCGCCGGGCAATGCCGCTTACCGGAGCAACCGGGCGGCAGCATTGACCGGATTGGGACGGCTGCCGGAGGCGGTAAGGGCGTGTGAAGAGGCTGTGGGGTTGGATCCTAATTATGGGAGGGCGCATCAGCGCTTGGCAACGCTGTTTTTAAGGTTAGGACAGGTTGAGGATGCTAGGAAGCACCTTTGTTATCCTGGTCTGCACCCGGATCCTGCTGAGTTGCAGAAATTGCAAATTGTGGAAAAGCATATTAACAAATGTGGAGATGTTCGGAGGATAAGAGATTGGAACAGCGTACTGAGGGAGGTTGATGCTGCTGTTGCTGCTGGAGCAGACTCTTGTGTTCAGCTCTTTATGTGTAGAGCTGAAGCCCTTCTCAAACTACACCAGAGGGATGATGCTGAATTGTGTTTATCATGGATTCCCAAAAGTGAGCTGCATCCCAGTTCCTTGTCACAGGCAAGATTTTTCGGCATGTTTTCTGAGGCTTACTGCTACTTTGTTAGAGCTCAGATTGAGATGGCTTTTGGAAGGTTTGAGAATGCAGTTACAGCTGCTGAGAAAGCTAGTCAGATTGACCCCCGAAATGTTGAAGTTGCTGTTTTGCTCAAGAATGTGAGGATGGTGGCTAGAGCTAGACTGCGTGGTAATGATCTTTTTAAATCAGAAAGGTACACTGAGGCATGCTCGGCATATGGGGAAGGTTTGAGGCTTGACCCTTCAAACTCTGTTCTCTATTGCAACAGAGCAGCATGTTGGTTTAAGCTTGGGCAATGGGAAAGATCAATTGAAGATTGCAATCAAGCTTTACGCATCCAACCAAATTACGCAAAAGCCATTCTTCGAAGGGCTGCCTCAAATAGCAAGTTAGAAAGATGGGAAGAAGCCGTAAAGGATTATGAACTTTTGCGGAGAGAACTACCAGATGACAATGATGTTGCCGAAAATCTGTTTCATGCACAAGTAGCATTAAAGAAGTCTCGTGGGGAAGAAGTACACAATTTAAAGTTTGGTGGTGAAGTGGAGGACATATCCGGTCTTGAGCAGTTTAGAGCTGCAATATCTTTACCAGGTGTTTCTGTTGTTCATTTTGAAACTGCGTCAAACTTGCAATGTAAGAAGATATCTCCGTTCATGGTTACACTGTGCAGTCGCTATCCATCTATTAACTTTCTTAAGGTGGATATTCAAGCAAGCCCTGCAGTTGCCACTGCTGAGAATGTTAGGGTTGTACCAACCTTCAAGATCTACAAAAATGGCAGTCGAGTGAAGGAAATTATATGTCCTAGTCATGATATGTTGGAACACTCCATTAGGCATTACAGCTTGTAG 2049 0.5041 MSHSGKPVSELGLNERLRDSLSFSDDSNKPDFRELDLGSPVSTLRPRQHFHHHSAPTTSSNSSSSGGSTGSVPGQSNPVSGRSHSGELSGSSETNSPTRVSKPGHRRSYSGQSLSQGQRSPSSCSAAVNSPPLNVLPAGNICPSGRVLKAATVAAAASRSSRSDVLGSGTGNYGHGSIMRGGKGGGGNSGGGDAANVKIGGGDSGKRVDPEEVKRMGNEEYKRGHFGEALCLYDRAIAMSPGNAAYRSNRAAALTGLGRLPEAVRACEEAVGLDPNYGRAHQRLATLFLRLGQVEDARKHLCYPGLHPDPAELQKLQIVEKHINKCGDVRRIRDWNSVLREVDAAVAAGADSCVQLFMCRAEALLKLHQRDDAELCLSWIPKSELHPSSLSQARFFGMFSEAYCYFVRAQIEMAFGRFENAVTAAEKASQIDPRNVEVAVLLKNVRMVARARLRGNDLFKSERYTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGQWERSIEDCNQALRIQPNYAKAILRRAASNSKLERWEEAVKDYELLRRELPDDNDVAENLFHAQVALKKSRGEEVHNLKFGGEVEDISGLEQFRAAISLPGVSVVHFETASNLQCKKISPFMVTLCSRYPSINFLKVDIQASPAVATAENVRVVPTFKIYKNGSRVKEIICPSHDMLEHSIRHYSL* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01641 682 CDD TRX_family 587 668 - -
Lapu11g01641 682 ProSiteProfiles TPR repeat profile. 210 243 IPR019734 GO:0005515
Lapu11g01641 682 SUPERFAMILY TPR-like 210 438 IPR011990 GO:0005515
Lapu11g01641 682 SMART tpr_5 402 435 IPR019734 GO:0005515
Lapu11g01641 682 SMART tpr_5 448 481 IPR019734 GO:0005515
Lapu11g01641 682 SMART tpr_5 244 277 IPR019734 GO:0005515
Lapu11g01641 682 SMART tpr_5 210 243 IPR019734 GO:0005515
Lapu11g01641 682 SMART tpr_5 516 549 IPR019734 GO:0005515
Lapu11g01641 682 SMART tpr_5 482 515 IPR019734 GO:0005515
Lapu11g01641 682 SUPERFAMILY Thioredoxin-like 485 680 IPR036249 -
Lapu11g01641 682 MobiDBLite consensus disorder prediction 182 213 - -
Lapu11g01641 682 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 22 679 IPR044534 -
Lapu11g01641 682 Coils Coil 522 542 - -
Lapu11g01641 682 MobiDBLite consensus disorder prediction 53 127 - -
Lapu11g01641 682 MobiDBLite consensus disorder prediction 1 127 - -
Lapu11g01641 682 MobiDBLite consensus disorder prediction 19 33 - -
Lapu11g01641 682 Pfam Thioredoxin 589 674 IPR013766 -
Lapu11g01641 682 ProSiteProfiles TPR repeat profile. 402 435 IPR019734 GO:0005515
Lapu11g01641 682 Pfam Tetratricopeptide repeat 484 515 IPR001440 GO:0005515
Lapu11g01641 682 Pfam Tetratricopeptide repeat 216 276 - -
Lapu11g01641 682 FunFam TPR repeat-containing thioredoxin TTL4 574 681 - -
Lapu11g01641 682 ProSiteProfiles TPR repeat profile. 482 515 IPR019734 GO:0005515
Lapu11g01641 682 Gene3D Tetratricopeptide repeat domain 208 568 IPR011990 GO:0005515
Lapu11g01641 682 Pfam Tetratricopeptide repeat 404 435 IPR019734 GO:0005515
Lapu11g01641 682 Gene3D Glutaredoxin 575 681 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01641 Lapu-Chr11 25214716 25218764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01641 447 592 U-box Gene Family AT3G07370 27.869 2.86e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01641 - - gmx:100799577 1122.46