Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01636 ATGGATCCGACCAAGAAGCGCAAGCTTGAAGAGAACGGTTTCGGCGATTCCGACCCGCTTAAACTCTCTCCCTCCGAGGCACGAAAACTCATCGAGCGCTTCACCCCGGAGCAGCTCCTCGACATCCTTCAGGACGCGGTGGCGCGCCATTCCGACGTGCTCGCCTCAGTGCGCGCCGTCGCGGACCCCGACGTGTCGCAGCGGAAACTCTTTGTGCGCGGCCTCGGGTGGGACACCACCACTGACGGCCTCCGCTCGCTCTTCTCCGCCTACGGTGAGCTTGAGGAGGCTGTCGTGATCGTCGACAAGGCAACCGGCAAGTCCAAGGGGTACGGCTTCGTCACCTTCCGCCACGTGGACGGCGCACTTCTAGCTCTCCGCGAACCCAGCAAGCGCATCGACGGGCGCGTGACCGTTACGCAGCTCGCTGCTGCAGGGAACTCCGCGTCGAACGCCAACGCCGCCGACGTTGCCCTCAGGAAGATCTACGTCGCCAACGTCCCGCCGGACCTCCCCGCAGACAAGCTCCTTGCGCATTTTTCTGTGTATGGTGAGATCGAAGAGGGGCCGTTAGGGTTCGATAAACAAACTGGGAAATCGAAGGGGTTTGCGCTTTTTGTTTATAAGACTCCTGAAGGGGCTCAAGCTGCGTTATTAGATCCTGTGAAGACTGTGGAAGGAAGGCAATTGAGTTGTAAATTGGCGATAACGGATGGGAAGCAGGGGAAGCGAGCCGGGCCAGATTCGGGTCAGGCCCATGGGAATGTTCAGCACGGTCACGGGGATGGAGTGGGGACTGGAATGGGGATGCCGCCTGCGGCGGGGGCTGGGCCGGGGCAATATGGCGGCCCGCAGTATGGGGGCCCTGTTGGGTTGGGTTCGTATGGTGGGTTTGGTGGACAACCTCCGATTGGTAACCATAATCATCCACTGAATTCGTCCAACCCCGTACCCGGTTCTATGGCGGGTGCTGGCGGATACGGTGCTGGGATGGGTGGGCCTTATGGTGGATACGGTGGGCCGGGCTCGACGGGCTTTGGTGCTGCAGGTGGGTTAGGAGGAGCTGGTGGAGGTGCTGGTGTTGGTGGTGGGCTTGGAGGAGCTGGTGGGGGTCTTGGTGGTGGTGCTGGTTCTTTGTATAGATTGCCGGGTTCGGGCGGCATGCCGACTGGCGGTGGAGGATACCCGGAGGGTGGTCCTTATGGTTTATCAGCTTCGGCTGGGTACCAGAACCAGCATCATCCTCCTTCTGGTGCTTCTCCTGTGCCCAGAGTTCCACCTGGTTCAATGTACCCCAATGTGCCTCCTTACTATTAA 1317 0.6029 MDPTKKRKLEENGFGDSDPLKLSPSEARKLIERFTPEQLLDILQDAVARHSDVLASVRAVADPDVSQRKLFVRGLGWDTTTDGLRSLFSAYGELEEAVVIVDKATGKSKGYGFVTFRHVDGALLALREPSKRIDGRVTVTQLAAAGNSASNANAADVALRKIYVANVPPDLPADKLLAHFSVYGEIEEGPLGFDKQTGKSKGFALFVYKTPEGAQAALLDPVKTVEGRQLSCKLAITDGKQGKRAGPDSGQAHGNVQHGHGDGVGTGMGMPPAAGAGPGQYGGPQYGGPVGLGSYGGFGGQPPIGNHNHPLNSSNPVPGSMAGAGGYGAGMGGPYGGYGGPGSTGFGAAGGLGGAGGGAGVGGGLGGAGGGLGGGAGSLYRLPGSGGMPTGGGGYPEGGPYGLSASAGYQNQHHPPSGASPVPRVPPGSMYPNVPPYY* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01636 438 PANTHER GEO13361P1-RELATED 51 343 - -
Lapu11g01636 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 237 IPR000504 GO:0003723
Lapu11g01636 438 MobiDBLite consensus disorder prediction 1 15 - -
Lapu11g01636 438 FunFam UBP1-associated protein 2C isoform A 153 301 - -
Lapu11g01636 438 Gene3D - 149 270 IPR012677 -
Lapu11g01636 438 MobiDBLite consensus disorder prediction 419 438 - -
Lapu11g01636 438 Gene3D - 59 148 IPR012677 -
Lapu11g01636 438 FunFam UBP1-associated protein 2C isoform A 51 152 - -
Lapu11g01636 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 145 IPR000504 GO:0003723
Lapu11g01636 438 MobiDBLite consensus disorder prediction 1 21 - -
Lapu11g01636 438 SUPERFAMILY RNA-binding domain, RBD 58 143 IPR035979 GO:0003676
Lapu11g01636 438 MobiDBLite consensus disorder prediction 238 317 - -
Lapu11g01636 438 SUPERFAMILY RNA-binding domain, RBD 149 267 IPR035979 GO:0003676
Lapu11g01636 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 137 IPR000504 GO:0003723
Lapu11g01636 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 162 219 IPR000504 GO:0003723
Lapu11g01636 438 MobiDBLite consensus disorder prediction 390 438 - -
Lapu11g01636 438 SMART rrm1_1 69 141 IPR000504 GO:0003723
Lapu11g01636 438 SMART rrm1_1 161 233 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01636 Lapu-Chr11 25088412 25094969 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01636 156 235 C2H2 Transcription Factor Family AT2G19380 40.000 9.41e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01636 K12741 - gmx:100776220 569.311