Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01628 ATGGATAGTGGCTACTACAATCAGCAGCAGCACCGCCACCACCCTCACCTCGACAACAACAATGAACCACATTTACCTCCTGGCTTCCGGTTCCACCCCACAGACGAGGAACTCATCACATACTACCTCCTCAAGAAGGTTCTAGACAGTTCCTTCACTGGCCGAGCCATAGTTGAAGTCGACCTTAACAAGTGCGAGCCATGGGAGCTTCCTGAGAAAGCTAAGATGGGTGAGAAGGAATGGTACTTCTATAGCCTTCGTGACCGAAAGTACCCAACTGGCTTACGCACCAACAGGGCCACAGAGGCTGGTTATTGGAAAGCCACAGGAAAAGACAGAGAGATCTATAGCTCCAAAACCTGTTCTCTCGTTGGAATGAAGAAAACCCTGGTTTTCTATAGAGGAAGAGCTCCAAAGGGTGAAAAGAGCAACTGGGTCATGCATGAGTATCGTTTAGAAGGCAAATTCGCTTACCACTACCTCTCCAGAAGCTCCAAGGATGAGTGGGTGATATCGCGTGTGTTTCAGAAGAACAACACCGGCGGTGCCTCTACTGTGTCAGCCGCCGCAGCCACAGGCGGTTCCAAGAAAACAAGAATGAGCACATCAAACACAAGCAGCAATATGAGCCTCTGCCCAGAACCGGGTTCACCTTCTTCCATTTACCTCCCACCACTTCTAGAATCTTCTCCTTACGCCGCAAGCAGCAGCGCCGCCGCAACATTCAACGACCGCGAAAGCTACTCCTTCGAAAGCGCCGCCGCCGCCGCCAACCAAAGGGAGCACGTGTCCTGTTTCTCCACCATGTCCACCGACGCTGCCGCCTTCAGCCACCTCGCTCCTCCACCGGAGCCGCCGCTTGACCCTTTCTCCCGCTTTCATAGGAACAACGTTGGAGTCTCCGCCTTCCCATGCTTGAGGTCCTTGCACGACAACCTTAACCTCCCCTTCTTTTTCCCTCCCGTGGTCCACGGCGGTGCTGACGTAGCAAATTTTAGCGCCGTCGCAAACTTTCCGGCGCCGGAGGATCCGAGGGTGGCTGACGGCAGTTCTGGCATGGCGATTGTACCGTCTGATTTGGATTGCATGTGGGGTTATTGA 1101 0.5359 MDSGYYNQQQHRHHPHLDNNNEPHLPPGFRFHPTDEELITYYLLKKVLDSSFTGRAIVEVDLNKCEPWELPEKAKMGEKEWYFYSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRSSKDEWVISRVFQKNNTGGASTVSAAAATGGSKKTRMSTSNTSSNMSLCPEPGSPSSIYLPPLLESSPYAASSSAAATFNDRESYSFESAAAAANQREHVSCFSTMSTDAAAFSHLAPPPEPPLDPFSRFHRNNVGVSAFPCLRSLHDNLNLPFFFPPVVHGGADVANFSAVANFPAPEDPRVADGSSGMAIVPSDLDCMWGY* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01628 366 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 24 243 - -
Lapu11g01628 366 FunFam NAC domain-containing protein 100-like 34 181 - -
Lapu11g01628 366 Gene3D NAC domain 34 181 IPR036093 GO:0003677|GO:0006355
Lapu11g01628 366 ProSiteProfiles NAC domain profile. 25 177 IPR003441 GO:0003677|GO:0006355
Lapu11g01628 366 SUPERFAMILY NAC domain 21 177 IPR036093 GO:0003677|GO:0006355
Lapu11g01628 366 MobiDBLite consensus disorder prediction 1 28 - -
Lapu11g01628 366 MobiDBLite consensus disorder prediction 183 215 - -
Lapu11g01628 366 Pfam No apical meristem (NAM) protein 26 152 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01628 Lapu-Chr11 24770188 24772260 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01628 1 366 NAC Transcription Factor Family AT5G53950 52.897 1.10e-119 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lapu11g01628 NAM 3.9e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01628 - - gmx:100788671 551.206