Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01616 ATGGAGGCCAGGAGTGTGGAGAGGAAGAGATCACTGGTTGAGAGGGTGAGAAAGAATGTGGAAGAGGAAGTGGAAAATGAAGTGGAAGATGATGATGAAAGTGGTGCTAGTCTCACTGAAGAAGAGAAAAGGAGAGGGGTTAGTAGCAATAGTGGTGGCGGGAGAAGAGGGTCAAGTGGGGGTGGTGGAGGGATTTCTCCACCTTCCTGTCAAGCAGAGAGGTGTGGTGCTGATTTGACTGATGCAAAGAGGTACCATCGCCGCCACAAGGTGTGTGAGTTTCACTCCAAAGCACCTGTTGTGGTGGTTGCAGGGCTGAGGCAGAGGTTTTGCCAGCAATGTAGCAGATTCCATGACCTGGCTGAGTTCGATGAGTCTAAGAGAAGCTGCCGGAGGCGGTTGGCGGGACACAATGAACGGCGCCGGAAAAGCAACCCTGAAGTTGCCAGCGAGGGCAGCAGCCAGAACAGCAAAGGCCATCACCACCCTAAGGAAACAACACACTGCAGGCTTGCTGATGAGAGAGGGAGGATTCAGATGAACCTAACTGGAAGTTCTGGCTACAAGTCTTTCAACATCAGATGA 585 0.5197 MEARSVERKRSLVERVRKNVEEEVENEVEDDDESGASLTEEEKRRGVSSNSGGGRRGSSGGGGGISPPSCQAERCGADLTDAKRYHRRHKVCEFHSKAPVVVVAGLRQRFCQQCSRFHDLAEFDESKRSCRRRLAGHNERRRKSNPEVASEGSSQNSKGHHHPKETTHCRLADERGRIQMNLTGSSGYKSFNIR* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01616 194 Gene3D - 61 131 IPR036893 GO:0003677|GO:0005634
Lapu11g01616 194 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 43 158 IPR044817 GO:0003677
Lapu11g01616 194 MobiDBLite consensus disorder prediction 134 175 - -
Lapu11g01616 194 Pfam SBP domain 70 143 IPR004333 GO:0003677
Lapu11g01616 194 MobiDBLite consensus disorder prediction 157 175 - -
Lapu11g01616 194 MobiDBLite consensus disorder prediction 1 70 - -
Lapu11g01616 194 ProSiteProfiles Zinc finger SBP-type profile. 67 144 IPR004333 GO:0003677
Lapu11g01616 194 MobiDBLite consensus disorder prediction 1 23 - -
Lapu11g01616 194 FunFam Squamosa promoter-binding-like protein 14 62 131 - -
Lapu11g01616 194 Coils Coil 3 26 - -
Lapu11g01616 194 SUPERFAMILY SBT domain 68 148 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01616 Lapu-Chr11 24278107 24279618 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01616 54 153 SBP-box Gene Family AT1G53160 67.327 4.05e-40 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lapu11g01616 SBP 1.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01616 - - gmx:100787416 281.182