Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01607 ATGGTGTTGCAAAGATATTGGCCTATGGCTTTTGTGCAATGGTGTTTTTGGGCTTGGTTTATTTGCTTTTCTGTGGGACTTGAGACGCTAGCCAGTCCTTGTGACAAGCAGGATTTGTTGGCCCTGAAAGAATTTGCAGGCAACCTTACAAAAGGGTCTATCATCACAGAATGGTCAGATGATGTTGCCTGCTGCAAATGGGTTGGAGTTGTTTGTGATCATGTGGTTGATGGAGCAGCTGGTAGTAGAGTGTCCAAGTTGATTCTACCTGGAATGGGTCTTAACGGCACGATTTCAAGCTCTTTAGCTTATCTGGATGAGCTGAAAGTGCTTGATATTTCGTTCAATCGTCTCCAAGGTGGATTACCTTCGGAGTTCTCTAATCTGAAGCAGTTAGAAGTTCTTGACTTGAGCCATAATATTCTGTCTGGACCACTTGTTGGGCCACTCTCTGGTTTGCAATCCATTCAGATACTGAATATTTCCAGTAATTTATTTGTTGGAGACCTCTTCCAATTTGGGGGATTACAGCATCTCGTTGCTCTCAGCATAAGCAACAATTCATTCACTGGCCAGTTCAATTCTCAAATTTGCAGCTTCTCCAAGGGTATTCTTATTCTTGATATATCAAAAAATAGATTTTCTGGTGGTCTTGAATGGTTGGGAAACTGCAGCACATCTCTCCGAGAGTTACATTTGGATTCCAATTTTTTCACTGGCTATCTTCCTGATTCCTTGTATTCAATGTCAGCCTTGGAGCAGCTCTCGGTCTCTGTGAACGGCCTCTCCGGTCAGTTAAGCATGAAGCTAAGTAACCTGTCAAGCCTAAAATCTCTAATAATTTCTGGAAATCAGTTTTCAGGGGAACTCCCAAATGTTTTTGGGAATCTTTCGGACCTTGAACAACTAATAGGACACTCCAATTCATTTTCTGGATCATTGCCTTCCACCTTGGCCTTGTGCTCAAAACTTCGAGTTCTTGATCTTCGAAATAATTCTTTGACAGGTTCTGTTAGCCTTAATTTCACTGGGTTGTCTAATCTTTCCACGTTGGACCTTGGTAGCAATCATTTTAATGGACTCCTTCCAAATTCTGTGTCCAATTGCCATGAATTGACAATGCTAAGCCTTGCAAAAAATGAATTAACTGGCCAAATCCCTGGGAGTTATGCAAACCTCACTTCACTTTTGACTTTGTCTCTGTCAAACAATAGCTTTGAGAACCTATCTGGGGCGCTTTATGTACTGCAGCAGTGCAAAAATCTCACCACTCTTATCCTCACAAAGAATTTCCATGGTGAGGAAATTTCAGATAATTTATCTGTAAGCTTCAAGAGCCTTGTTGTTTTAGCTCTTGGAAATTGTGGTCTCAAAGGCCGTATTCCTGCTTGGCTTTTGAATTGCTCGAAATTGGAAGTTCTTGATTTGTCATGGAACCATTTGGAAGGCAGTGTTCCATCTTGGATTCGCTGGATGGATCATCTGTTTTACTTGGATTTATCAAATAATTCTCTTACAGGAGAAATACCAAAAGGTTTGACAGAGCTGAAGGGTCTCATATCCCCAAATTATCATATATCAAATCTCTTTGCATCAGCTGCTATTCCTCTATATGTCAAGAGAAACAAGAGTGCTAGTGGGTTGCAATATAACCATGCTTCGAGTTTCCCTCCGTCAATATACTTGAGCAATAACAGATTAAGCGGAACAATATGGCCTGAAATCGGTCATTTGAGGGAACTTCATATCTTAGATTTAAGCAGGAACAACATCACCGGCACCATTCCCAGCTCTATCTCTGAGATGAAGAATTTGGAAACATTAGATTTATCTAATAATAATCTATATGGAACTATTCCTCCTTCATTTAACAACCTCACATTCTTGTCTAAGTTCAGTGTGGCTTATAATCACTTATGGGGAACAATTCCAGCCGGGGGACAATTTACAAGCTTCCCAAATTCAAGCTTTGAGGGCAACCTGGGGCTTTGTGGGGAAACATATCATCATTGTAACAATGAAGAAAATGCTGACATTTCTACTCATTCTGTGGGAAAATTTGGCAAAAGCAGTGTTCTAGGCATCACAATTGGTTTAGGAGTGGGCCTTGCAGTACTCCTTGCAGTTATTCTGCTAAGAATGTCAAAGAGGGATGAGGATAAACCAGTGGATAACTTTGATGAGGAGCTTAGCTGGCCAAACAGGATACCTGAAGCACTTGGTACTTCAAAATTGGTGCTTTTTCAGAGTTCAGATTGCAAGGATCTCACAGTTGAAGATTTGATAAAATCTACCAACAGTTTTAACCAAGAAAATATAATTGGTTGTGGTGGATTTGGTCTTGTGTACAAGGCGAATCTTCCAAATGGCACAAAGGTAGCTGTCAAGAAACTTTCAGGATACTGTGGTCAGGTGGAACGAGAATTCCAAGCAGAAGTGGAGGCACTCTCTAGAGCTCAACATAAGAACCTTGTTTCACTCAAAGGTTATTGTCAGCATGTCAATGACAGATTGTTAATTTACTCCTACTTAGAGAATGGAAGCCTTGACTATTGGTTGCATGAGAGTGAGGATGAGAATTCAGCTCTAAAATGGAATGTAAGACTCAAGATTGCCCAAGGTGCAGCTCATGGACTAGCTTATTTGCACAAGGAATGTGAACCACATATTGTGCACCGAGATATTAAATCTAGCAACATACTTTTGGATGATAAATTTGAAGCTTATTTGGCTGACTTTGGTCTTTCAAGGCTACTTCAACCCTATGATACCCATGTTTCAACAGATTTAGTGGGAACTTTAGGATATATTCCTCCAGAATATAGTCAAGCACTGAAAGCAACATTCAAAGGTGATATATATAGCTTTGGTGTTGTTCTTGTTGAGCTTCTTACTGGTCGAAGGCCTGTAGAAGTCATAGTCGGGCAATGCAGCAGCAGGAATCTAGTGTCTTGGGTGTTTCAGATGAAATCTGAGAATAGAGATCAAGAAATTTTTGATTCAGTCATTTGGCACAAGGATATTGAGAAACAGCTCTTAGAGGTACTAGCTATTGCTTGTAAATGTATACATGAAGATCCAAGACAGAGACCCCATATTGAATTAGTTGTTTCATGGCTTGATGGTGTAGGTTTTGATGCCTCTGAACAGTCATCATCTTAA 3162 0.4035 MVLQRYWPMAFVQWCFWAWFICFSVGLETLASPCDKQDLLALKEFAGNLTKGSIITEWSDDVACCKWVGVVCDHVVDGAAGSRVSKLILPGMGLNGTISSSLAYLDELKVLDISFNRLQGGLPSEFSNLKQLEVLDLSHNILSGPLVGPLSGLQSIQILNISSNLFVGDLFQFGGLQHLVALSISNNSFTGQFNSQICSFSKGILILDISKNRFSGGLEWLGNCSTSLRELHLDSNFFTGYLPDSLYSMSALEQLSVSVNGLSGQLSMKLSNLSSLKSLIISGNQFSGELPNVFGNLSDLEQLIGHSNSFSGSLPSTLALCSKLRVLDLRNNSLTGSVSLNFTGLSNLSTLDLGSNHFNGLLPNSVSNCHELTMLSLAKNELTGQIPGSYANLTSLLTLSLSNNSFENLSGALYVLQQCKNLTTLILTKNFHGEEISDNLSVSFKSLVVLALGNCGLKGRIPAWLLNCSKLEVLDLSWNHLEGSVPSWIRWMDHLFYLDLSNNSLTGEIPKGLTELKGLISPNYHISNLFASAAIPLYVKRNKSASGLQYNHASSFPPSIYLSNNRLSGTIWPEIGHLRELHILDLSRNNITGTIPSSISEMKNLETLDLSNNNLYGTIPPSFNNLTFLSKFSVAYNHLWGTIPAGGQFTSFPNSSFEGNLGLCGETYHHCNNEENADISTHSVGKFGKSSVLGITIGLGVGLAVLLAVILLRMSKRDEDKPVDNFDEELSWPNRIPEALGTSKLVLFQSSDCKDLTVEDLIKSTNSFNQENIIGCGGFGLVYKANLPNGTKVAVKKLSGYCGQVEREFQAEVEALSRAQHKNLVSLKGYCQHVNDRLLIYSYLENGSLDYWLHESEDENSALKWNVRLKIAQGAAHGLAYLHKECEPHIVHRDIKSSNILLDDKFEAYLADFGLSRLLQPYDTHVSTDLVGTLGYIPPEYSQALKATFKGDIYSFGVVLVELLTGRRPVEVIVGQCSSRNLVSWVFQMKSENRDQEIFDSVIWHKDIEKQLLEVLAIACKCIHEDPRQRPHIELVVSWLDGVGFDASEQSSS* 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01607 1053 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
Lapu11g01607 1053 Gene3D Ribonuclease Inhibitor 372 680 IPR032675 -
Lapu11g01607 1053 ProSiteProfiles Protein kinase domain profile. 768 1040 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu11g01607 1053 SUPERFAMILY Protein kinase-like (PK-like) 749 1040 IPR011009 -
Lapu11g01607 1053 FunFam Leucine-rich repeat receptor-like protein kinase 844 1051 - -
Lapu11g01607 1053 SUPERFAMILY L domain-like 54 304 - -
Lapu11g01607 1053 Gene3D Transferase(Phosphotransferase) domain 1 844 1048 - -
Lapu11g01607 1053 ProSiteProfiles Leucine-rich repeat profile. 604 626 IPR001611 GO:0005515
Lapu11g01607 1053 SMART LRR_typ_2 602 625 IPR003591 -
Lapu11g01607 1053 SMART LRR_typ_2 492 516 IPR003591 -
Lapu11g01607 1053 SMART LRR_typ_2 393 416 IPR003591 -
Lapu11g01607 1053 SMART LRR_typ_2 273 296 IPR003591 -
Lapu11g01607 1053 SMART LRR_typ_2 345 368 IPR003591 -
Lapu11g01607 1053 SMART LRR_typ_2 578 601 IPR003591 -
Lapu11g01607 1053 SMART LRR_typ_2 105 128 IPR003591 -
Lapu11g01607 1053 Pfam Protein kinase domain 769 1036 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu11g01607 1053 SMART LRR_sd22_2 393 411 - -
Lapu11g01607 1053 SMART LRR_sd22_2 321 350 - -
Lapu11g01607 1053 SMART LRR_sd22_2 105 131 - -
Lapu11g01607 1053 SMART LRR_sd22_2 492 515 - -
Lapu11g01607 1053 SMART LRR_sd22_2 578 601 - -
Lapu11g01607 1053 SMART LRR_sd22_2 602 628 - -
Lapu11g01607 1053 SMART LRR_sd22_2 249 275 - -
Lapu11g01607 1053 SMART serkin_6 768 1040 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu11g01607 1053 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 76 303 - -
Lapu11g01607 1053 Gene3D Ribonuclease Inhibitor 172 264 IPR032675 -
Lapu11g01607 1053 Gene3D Ribonuclease Inhibitor 34 171 IPR032675 -
Lapu11g01607 1053 ProSitePatterns Serine/Threonine protein kinases active-site signature. 890 902 IPR008271 GO:0004672|GO:0006468
Lapu11g01607 1053 Pfam Leucine rich repeat 446 505 IPR001611 GO:0005515
Lapu11g01607 1053 Pfam Leucine rich repeat 107 165 IPR001611 GO:0005515
Lapu11g01607 1053 Pfam Leucine rich repeat 323 382 IPR001611 GO:0005515
Lapu11g01607 1053 Pfam Leucine rich repeat 579 639 IPR001611 GO:0005515
Lapu11g01607 1053 ProSitePatterns Protein kinases ATP-binding region signature. 774 797 IPR017441 GO:0005524
Lapu11g01607 1053 PRINTS Leucine-rich repeat signature 602 615 - -
Lapu11g01607 1053 PRINTS Leucine-rich repeat signature 495 508 - -
Lapu11g01607 1053 Gene3D Phosphorylase Kinase; domain 1 735 843 - -
Lapu11g01607 1053 SUPERFAMILY L domain-like 238 644 - -
Lapu11g01607 1053 Gene3D Ribonuclease Inhibitor 265 365 IPR032675 -
Lapu11g01607 1053 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 738 843 - -
Lapu11g01607 1053 FunFam Tyrosine-sulfated glycopeptide receptor 1 342 676 - -
Lapu11g01607 1053 CDD STKc_IRAK 774 1042 - -
Lapu11g01607 1053 PANTHER LEUCINE RICH REPEAT KINASE 2 296 1041 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01607 Lapu-Chr11 23887507 23890668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01607 39 1052 Receptor kinase-like Gene Family AT1G55610 33.778 1.95e-160 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Lapu11g01607 Pkinase 6.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01607 - - gmx:100789534 1776.14