Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01595 ATGGGTCGCCCACCCAGTAATGGAGGCCCAGCCTTTCGCTTCACTCCGGTTGAGGTAGGAGAAATGGAAGCTATTCTTCAAGAACATGAGAATGCAATGCCAGCACGTGAAGTTCTTACAGCTCTTGCAGAGAAGTTCAGTGAATCACCAGATCGTAAAGGCAAGATTACAGTGCAAATGAAACAAGTTTGGAATTGGTTTCAAAATAAGCGGTATGCAATAAGAGCAAAATCAAGTAAGACTCCTGGGAAGTTAAATATTACACCTATGCATCGGGATGATGCAAACCCAGTAAGGACTATGCCTCAACAACCAACAGCTGCTCCAATTCCTGCTGCTTCTGCTACAGCAGTTTTACCAGCAGTAAAAGCAACTACAGAAAATCCAGTTATGGAATTTGAAGCTAAATCTGGAAGGGATGGAGCATGGTATGATGTTGCTACCTTCCTATCACACAGATATTTGGAGACCAATGATCCGGAAGTGCTTGTACGATTTGCTGGGTTTGGACCTGAGGAAGATGAGTGGATTAACATTCGAAGGCATGTCAGACCTCGCTCTTTGCCATGTGAATCATCAGAATGTGTTGTAGTAATCCCGGGTGATCTCATACTTTGTTTTCAGGAAGGTAAGGAGCAAGCCCTATACTTTGATGCCCATGTACTTGATGCTCAAAGACGGAGACATGATGTAAGAGGCTGTCGTTGTAGATTTTTGGTTCGCTATGATCATGATCAATCAGAGGAAATCGTTCCACTTAGGAAGATTTGTCGCAGGCCCGAAACTGATTACAGATTACATCAACTTCATGCTGTGAATGAGGTAGCACCTGTGGATCAGCAGAAGACTGGCATGGATCCAGCAGCAAATGTTAATGTCATGAGGGTCACTACTGAGACAGTGCCAAAGCAGCTGATTGCATCAAGCATTCATTTGGAGACTCCAGTAGTGCAAACAAGTGTTCCTCAAACTCCACAAAGTATGGATATGGATGTAGATCAAAAGAAAGCTGAAACAAATGCTGATGTTCCAGCAGGAAACTCTACCACCACCCCAGCCAGTGCCCCATTCACTAGTATCATTACTGCAAGCAGTGTTCCTCAAGTCACTAGTCAGACTCAGAACATGGTTGAATGA 1137 0.4406 MGRPPSNGGPAFRFTPVEVGEMEAILQEHENAMPAREVLTALAEKFSESPDRKGKITVQMKQVWNWFQNKRYAIRAKSSKTPGKLNITPMHRDDANPVRTMPQQPTAAPIPAASATAVLPAVKATTENPVMEFEAKSGRDGAWYDVATFLSHRYLETNDPEVLVRFAGFGPEEDEWINIRRHVRPRSLPCESSECVVVIPGDLILCFQEGKEQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKICRRPETDYRLHQLHAVNEVAPVDQQKTGMDPAANVNVMRVTTETVPKQLIASSIHLETPVVQTSVPQTPQSMDMDVDQKKAETNADVPAGNSTTTPASAPFTSIITASSVPQVTSQTQNMVE* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01595 378 MobiDBLite consensus disorder prediction 341 355 - -
Lapu11g01595 378 Gene3D - 190 262 - -
Lapu11g01595 378 MobiDBLite consensus disorder prediction 81 106 - -
Lapu11g01595 378 Gene3D - 10 84 - -
Lapu11g01595 378 SUPERFAMILY Homeodomain-like 4 76 IPR009057 -
Lapu11g01595 378 SMART HOX_1 7 81 IPR001356 GO:0003677
Lapu11g01595 378 Pfam SAWADEE domain 131 257 IPR032001 GO:0003682
Lapu11g01595 378 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Lapu11g01595 378 MobiDBLite consensus disorder prediction 320 355 - -
Lapu11g01595 378 CDD homeodomain 13 75 IPR001356 GO:0003677
Lapu11g01595 378 Gene3D - 129 189 - -
Lapu11g01595 378 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 1 339 IPR039276 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01595 Lapu-Chr11 23330900 23356482 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lapu11g01595 SAWADEE 1.4e-39 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01595 - - gmx:100783895 627.091