Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01594 ATGGAATCTAAATACTTCGACTCCAATGGTGAAGTCTCTCTAAAGCAAAAATCAAAATCCATTTCAGCAGAGCCAACAGTCTCTACTAGTGAAAATGATTGCTTTGATTGCAATATTTGCTTGGAATCAGCACATGACCCCGTGGTTACACTCTGTGGTCACCTTTACTGTTGGCCATGCATATACAAATGGCTTCATGTTCAAAACTCCTCTGTTGAACCAGACCAGCAGCAGACATGCCCAGTTTGTAAATCTCAGATCTCTCACACCTCAGTAGTCCCCCTCTATGGCCGTGGAACATCAAATTCGGAATCACAAGCTAAAAAACTCCAGATGAGTCTAGCAATACCTCACAGGCCACCTCCTTACAACTTGAATGATATGTTAACTTCTGCTCGAGCACCAGGGTATTCTGGCCAGCAACTTCGTCCAAGTTATTTCCAGTCACAGTCAAGACCATTTCATTATCAGCAGTACTTCCCTCACCTCTATGGAAGTTATGGCACAACCGGATTGCCTTATCTTGGAGGTGCTGCTATTACTAGCTTCTTTAATCCTATGATTGGTATGTTTGGGGAGATGGTCTTGACAAGAATTTTTGGGGTCTCAGATGCAAACTTGTTTTCATACCCTCATAATGCAAATAACAGTCCTAGAATGAGAAGGCAAGAAATGCAGATTGACAAGTCTCTGAACAGACTTTCCATCTTTTTTCTATGTTGTATCATTTTGTGTCTTCTCTTATTTTGA 750 0.4147 MESKYFDSNGEVSLKQKSKSISAEPTVSTSENDCFDCNICLESAHDPVVTLCGHLYCWPCIYKWLHVQNSSVEPDQQQTCPVCKSQISHTSVVPLYGRGTSNSESQAKKLQMSLAIPHRPPPYNLNDMLTSARAPGYSGQQLRPSYFQSQSRPFHYQQYFPHLYGSYGTTGLPYLGGAAITSFFNPMIGMFGEMVLTRIFGVSDANLFSYPHNANNSPRMRRQEMQIDKSLNRLSIFFLCCIILCLLLF* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01594 249 ProSitePatterns Zinc finger RING-type signature. 52 61 IPR017907 -
Lapu11g01594 249 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 12 246 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lapu11g01594 249 FunFam E3 ubiquitin-protein ligase RMA1H1 10 104 - -
Lapu11g01594 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 110 IPR013083 -
Lapu11g01594 249 SUPERFAMILY RING/U-box 33 96 - -
Lapu11g01594 249 ProSiteProfiles Zinc finger RING-type profile. 37 84 IPR001841 -
Lapu11g01594 249 SMART ring_2 37 83 IPR001841 -
Lapu11g01594 249 CDD RING-HC_AtRMA-like 35 85 - -
Lapu11g01594 249 Pfam Zinc finger, C3HC4 type (RING finger) 37 83 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01594 Lapu-Chr11 23312322 23313533 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01594 2 235 C3H Transcription Factor Family AT4G27470 47.917 4.43e-60 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01594 K10666 - gmx:100817526 392.889