Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01592 ATGCCAGCTTTGAAACCTGTGCTAAAACAACACATCATGGACCAGAACAACACTGTGCCAAGAATTCATGCATTCTCATCACCACCACCACCACCACCTTCTCCTCCCATGTTTTCCTTCATTATTGCTCTTTCCATCGCAACCCTAGTTTTCATGTGCTTCTACATTTTCTCAGCCATTGTTTCTGCAGCCATTCTTCTAGCCCTTTGCATCACTACCCTCTTCCTTTGCAGGTTTATGCATGATCGTGAATTCACAGAAACACTCTCCTTTCGTGAACACACTCCACAGAATAACCAAAGGGTGGTGAAAATTTTCAATAAGCTTTTCTGGGTTGTTGAGGATCAAAGGGGTGGCCAAAGGCAACAAGTAAAGAAGCTGCTAGGATCTATTGTGTGCTTTGGAAACGAAGCAATGGCATCAGGGAGTGAATGTGCTATTTGCTTGGAAGAGTTCAAGAATGGAGAAGAGTGCCTTGTATTCTCATTCTGTGGCCACACCTTCCATTGTGATTGTATCAAACACTGGTTAGAGGAAAAACCCACTTGCCCAAATTGCCGTCATCATGTGCCATCATCAGCCACCATGTTCACAAAATCAAGAAGCATGGAGTTCTTGGAGAATTTAGTTTAG 633 0.4344 MPALKPVLKQHIMDQNNTVPRIHAFSSPPPPPPSPPMFSFIIALSIATLVFMCFYIFSAIVSAAILLALCITTLFLCRFMHDREFTETLSFREHTPQNNQRVVKIFNKLFWVVEDQRGGQRQQVKKLLGSIVCFGNEAMASGSECAICLEEFKNGEECLVFSFCGHTFHCDCIKHWLEEKPTCPNCRHHVPSSATMFTKSRSMEFLENLV* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01592 210 CDD RING-H2_PA-TM-RING 144 187 - -
Lapu11g01592 210 ProSiteProfiles Zinc finger RING-type profile. 145 187 IPR001841 -
Lapu11g01592 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 193 IPR013083 -
Lapu11g01592 210 SUPERFAMILY RING/U-box 144 193 - -
Lapu11g01592 210 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 24 196 - -
Lapu11g01592 210 SMART ring_2 145 186 IPR001841 -
Lapu11g01592 210 Pfam Ring finger domain 144 187 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01592 26 188 C3H Transcription Factor Family AT2G17450 26.744 1.71e-14 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01592 - - vra:111240582 266.159