Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01586 ATGGCGAAAACGAGGCCAGGCAGAAAGGACTTGGACTCGTACACCATAAGAGGAACCAACAAGATCGTCCGAGCCGGTGATTGCGTTCTGATGCGGCCCTCGGACACGTCGAAGCCCCCTTACGTGGCGCGTGTGGAAAAGATCGAGCAGGACAACCGGAGCAACGTGAAGGTGCGTGTGAGGTGGTACTACAGACCCGAAGAGTCCATTGGTGGTCGGAGACAGTTCCATGGTGCCAAAGAGCTTTTTCTCTCCGACCACTATGATGTGCAGAGTGCGCACACCATTGAAGGCAAATGCGTAGTACACTCTTTCAAGAACTACACTAAGCTCGAGAATGTGGGTGCTGAGGATTACTATTGTAGATTTGAGTACAAGGCTGCCACTGGGGCTTTCACTCCTGACCGTGTTGCTGTGTATTGCAAATGTGAGATGCCATATAACCCAGATGACCTCATGGTACAATGTGAAGGGTGCAAGGATTGGTAA 489 0.5133 MAKTRPGRKDLDSYTIRGTNKIVRAGDCVLMRPSDTSKPPYVARVEKIEQDNRSNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCVVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDW* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01586 162 SMART BAH_4 21 136 IPR001025 GO:0003682
Lapu11g01586 162 SUPERFAMILY FYVE/PHD zinc finger 132 162 IPR011011 -
Lapu11g01586 162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 162 IPR013083 -
Lapu11g01586 162 Pfam BAH domain 23 135 IPR001025 GO:0003682
Lapu11g01586 162 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682
Lapu11g01586 162 Gene3D - 2 134 IPR043151 -
Lapu11g01586 162 FunFam Chromatin remodeling protein EBS 1 132 - -
Lapu11g01586 162 PANTHER OS08G0421900 PROTEIN 1 162 - -
Lapu11g01586 162 CDD BAH_BAHCC1 22 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01586 Lapu-Chr11 22804707 22805918 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01586 31 132 Core DNA Replication Machinery Family AT4G14700 29.126 3.23e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01586 K25868 - gmx:100800993 345.125