Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01554 ATGGGAGTTCCAGAGAGAGACCCTCTAGCACAATTGAGTTTGCCTCCGGGGTTTAGGTTTTACCCCACTGATGAAGAGCTTCTGGTTCAATACCTCTGTCGTAAGGTTGCTGGGCACCATTTTTCTCTTCCGATCATTGCTGAAGTTGATTTGTACAAGTTCGATCCATGGGTTCTTCCAGCTAAGGCTGTGTTTGGAGAAAAAGAATGGTACTTTTTCAGCCCGAGGGACAGGAAGTACCCGAATGGTTCACGACCAAACAGAGTTGCGGGTTCTGGGTACTGGAAAGCCACGGGAACTGATAAGGTTATCACTACCGAAGGAAGAAAAGTTGGCATAAAAAAAGCACTTGTTTTCTACGTTGGAAAAGCTCCCAAAGGCTCCAAAACCAATTGGATCATGCACGAGTATCGTGTTCTTGACTCTTCTCGCAGAAACAACCTCGGAACCACCAAGCTCGATGATTGGGTTTTGTGTCGTATATACAAGAAGAACTCGAGTTCGCAAAAGGTTGAGGCAAACTTTTGGGCCAAAGAATGCAGCAATGGGTCATCACCTTCTTCATCTTCCCAGGTGGAAGACATGCTGGAATCGTTTCAGGAGATCGATGATCAGTGTTTCACTTTGCCGAGGGTGAACTCGCTCAAAACAATGCAACAACCACAGGACGAGAAATTCGGGTTTCAAAACGTGGGATCCGGGTTCTTTTCTGATTGGGTTACCCCGCCGGATCTTGATTCGATTTCCGAATTCCGGTCGGGTTGTCAGACCCAAGGGATGGTGAATTATGAGTTCAATGACTTATTTGTCCCTTCCGTGCCGCCGTTCGGCCACGTGGAGTTCATGGCCGTGGCACCGACGGAGGAGGAGGTTCAAAGCAGTGTGAGAACTCAACAGCAGAACCCGAATGCCCGAAATTTGTCAGCCTCAAACGACCCGTTTGGGTTCGGGTTCGGGTTCATGGATCAGGAGATGAGGTTCGGGTTACGGAACTAG 996 0.4849 MGVPERDPLAQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLPIIAEVDLYKFDPWVLPAKAVFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVITTEGRKVGIKKALVFYVGKAPKGSKTNWIMHEYRVLDSSRRNNLGTTKLDDWVLCRIYKKNSSSQKVEANFWAKECSNGSSPSSSSQVEDMLESFQEIDDQCFTLPRVNSLKTMQQPQDEKFGFQNVGSGFFSDWVTPPDLDSISEFRSGCQTQGMVNYEFNDLFVPSVPPFGHVEFMAVAPTEEEVQSSVRTQQQNPNARNLSASNDPFGFGFGFMDQEMRFGLRN* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01554 331 FunFam NAC domain-containing protein 72-like 23 169 - -
Lapu11g01554 331 ProSiteProfiles NAC domain profile. 14 164 IPR003441 GO:0003677|GO:0006355
Lapu11g01554 331 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 217 - -
Lapu11g01554 331 SUPERFAMILY NAC domain 10 165 IPR036093 GO:0003677|GO:0006355
Lapu11g01554 331 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Lapu11g01554 331 Gene3D NAC domain 23 170 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01554 Lapu-Chr11 21160032 21161470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01554 1 326 NAC Transcription Factor Family AT4G27410 54.885 1.07e-114 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lapu11g01554 NAM 3.4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01554 - - gmx:100811301 571.622